def test_error_on_bad_record(self):
with self.assertRaises(ValueError):
NexusMaker([
Record(Word="leg", Item="", Cognacy="2") # no language
])
with self.assertRaises(ValueError):
NexusMaker([
Record(Language="French", Item="", Cognacy="2") # no word
])
def test_is_loan(self):
assert not Record(Loan="").is_loan
assert not Record(Loan=None).is_loan
assert Record(Loan="L").is_loan
assert Record(Loan="English").is_loan
assert Record(Loan=True).is_loan
assert Record(Loan="B").is_loan
assert Record(Loan="S").is_loan
assert Record(Loan="X").is_loan
assert Record(Loan="x").is_loan
def test_error_on_cognates_with_loans(self):
"""Test that we generate an error if a loan word enters .cognates()"""
n = NexusMaker(TESTDATA)
n.data.append(
Record(Language="D", Word="eye", Item="", Cognacy="1", Loan=True))
with self.assertRaises(ValueError):
n.cognates
def test_simple(self):
r = Record(ID=1,
WID=2,
LID=3,
Language='English',
Word='Hand',
Item='hand',
Annotation='?',
Cognacy=None,
Loan="L")
assert r.ID == 1
assert r.WID == 2
assert r.LID == 3
assert r.Language == 'English'
assert r.Word == 'Hand'
assert r.Item == 'hand'
assert r.Annotation == '?'
assert r.Loan == "L"
assert r.Cognacy == None
def test_get_token(self):
r = Record(ID=1,
WID=2,
LID=3,
Language='English',
Word='Hand',
Item='hand',
Annotation='?',
Cognacy=None,
Loan="L")
assert r.get_taxon() == "English_3"
r = Record(ID=1,
WID=2,
LID=None,
Language='English',
Word='Hand',
Item='hand',
Annotation='?',
Cognacy=None,
Loan="L")
assert r.get_taxon() == "English"
40167 006 Mopan 00026 Ulrich_and_Ulrich cloud muyal 6c
23136 024 Kiche 00004 Kaufman_1976 cloud suutZ' 2
23137 024 Kiche 00009 Campbell_1971b cloud suutZ' 2
23138 024 Kiche 00022 Mayers_ed_1966 cloud sutZ' 2
23139 024 Kiche 00061 Stoll_1884 cloud su'tZ 2
50386 024 Kiche 00086 Kaufman_2003 cloud mayuul 6
50389 024 Kiche 00086 Kaufman_2003 cloud mayuy 6b
53557 036 Popti 00086 Kaufman_2003 cloud xhmoyxi 6d
53558 036 Popti 00086 Kaufman_2003 cloud asun 1
"""
HEADER = [
'ID', "LID", "Language", "SID", "Source", "Word", "Item", "Cognacy", "Loan"
]
COMPLEX_TESTDATA = [
Record(**dict(zip(HEADER, r.split('\t')))) for r in RECORDS.split("\n")
if len(r.strip())
]
EXPECTED_COGNATES = {
('cloud', '1'): {
'Tojolabal_012', 'Chuj_013', 'Mocho_017', 'Jakalteko_014',
'Qanjobal_016', 'Akateco_015', 'Tuzanteco_037', 'Popti_036'
},
('cloud', '2'): {
'Achi_025', 'Kaqchikel_022', 'Poqomam_029', 'Sakapulteko_026',
'Ixil_021', 'Kiche_024', 'Poqomchi_030', 'Tzutujil_023',
'Uspanteko_028'
},
('cloud', '2b'): {'Qanjobal_016'},
('cloud', '3'): {'Awakateko_020'},
import sys
import unittest
from nexusmaker import Record
from nexusmaker import NexusMaker, NexusMakerAscertained, NexusMakerAscertainedWords
TESTDATA = [
Record(Language="A", Word="eye", Item="", Cognacy="1"),
Record(Language="A", Word="leg", Item="", Cognacy="1"),
Record(Language="A", Word="arm", Item="", Cognacy="1"),
Record(Language="B", Word="eye", Item="", Cognacy="1"),
Record(Language="B", Word="leg", Item="", Cognacy="2"),
Record(Language="B", Word="arm", Item="", Cognacy="2"),
Record(Language="C", Word="eye", Item="", Cognacy="1"),
# No Record for C 'leg'
Record(Language="C", Word="arm", Item="", Cognacy="3"),
Record(Language="D", Word="eye", Item="", Cognacy="1", Loan=True),
Record(Language="D", Word="leg", Item="", Cognacy="1"),
Record(Language="D", Word="leg", Item="", Cognacy="2"),
Record(Language="D", Word="arm", Item="", Cognacy="2,3"),
]
class TestNexusMakerInternals(unittest.TestCase):
def test_error_on_non_record(self):
with self.assertRaises(ValueError):
NexusMaker(['1'])
def test_error_on_bad_record(self):
with self.assertRaises(ValueError):
NexusMaker([
import unittest
from nexusmaker import NexusMaker, Record
TESTDATA = [
Record(Language="A", Word="eye", Item="", Cognacy="1"),
Record(Language="B", Word="eye", Item="", Cognacy="1"),
Record(Language="C", Word="eye", Item="", Cognacy="2"),
Record(Language="D", Word="eye", Item="", Cognacy="2"),
Record(Language="E", Word="eye", Item="", Cognacy=""),
]
class TestBugUniquesAndAmbig(unittest.TestCase):
"""
Fix Bug caused by lru_cache on ._is_missing_for_word that made unique
sites occur as single ones in blocks of missing states.
"""
def setUp(self):
self.maker = NexusMaker(data=TESTDATA)
self.nex = self.maker.make()
def test_cognate_sets(self):
assert ('eye', '1') in self.maker.cognates
assert ('eye', '2') in self.maker.cognates
assert ('eye', 'u_1') in self.maker.cognates
assert sorted(self.maker.cognates[('eye', '1')]) == ['A', 'B']
assert sorted(self.maker.cognates[('eye', '2')]) == ['C', 'D']
assert sorted(self.maker.cognates[('eye', 'u_1')]) == ['E']
def test_is_missing_for_word(self):
Iaai-471 125865 five thabyŋ
Lamogai-67 83796 five elmé 1
Lamogai-67 83881 hand mulǵu 45
Lamogai-67 83882 hand melsé 45
Lamogai-67 83883 hand milpí 45
Lamogai-67 83884 hand melép 45
Lamogai-67 83885 hand milpú 45
Lamogai-67 83886 hand meylá 45
Lamogai-67 83887 hand melsék 45
Lamogai-67 83942 leg kaip 1
Lamogai-67 83943 leg kaŋgú 1
"""
RECORDS = [r.split("\t") for r in RECORDS.split("\n") if len(r)]
COMPLEX_TESTDATA = [
Record(Language=r[0], Word=r[2], Item=r[3], Cognacy=r[4]) for r in RECORDS
]
EXPECTED_COGNATES = {
('five', '1'): {
'Aiwoo-501', 'Banoni-4', 'Dehu-196', 'Eton-1088', 'Hiw-639',
'Lamogai-67'
},
('leg', '86'): {'Aiwoo-501'},
('hand', '1'): {'Aiwoo-501', 'Banoni-4', 'Hiw-639'},
('hand', '64'): {'Banoni-4'},
('hand', '66'): {'Aiwoo-501'},
('leg', '95'): {'Eton-1088'},
('hand', '78'): {'Hiw-639'},
('leg', '17'): {'Hiw-639'},
('hand', '14'): {'Iaai-471'},