def __call__(self, n=None, get_sigmas=False, prior=None):
if n is None:
n=1
is_scalar=True
else:
is_scalar=False
pars=self.pars
npars=pars.size
widths = self.widths
guess=numpy.zeros( (n, npars) )
for j in xrange(n):
for i in xrange(npars):
if self.scaling=='linear' and i >= 4:
guess[j,i] = pars[i]*(1.0 + widths[i]*srandu())
else:
guess[j,i] = pars[i] + widths[i]*srandu()
if prior is not None:
self._fix_guess(guess, prior)
if is_scalar:
guess=guess[0,:]
if get_sigmas:
return guess, self.pars_err
else:
return guess
def get_shape_guess(g1, g2, n, width, max=0.99):
"""
Get guess, making sure in range
"""
g=numpy.sqrt(g1**2 + g2**2)
if g > max:
fac = max/g
g1 = g1 * fac
g2 = g2 * fac
guess=numpy.zeros( (n, 2) )
shape=ngmix.Shape(g1, g2)
for i in xrange(n):
while True:
try:
g1_offset = width[0]*srandu()
g2_offset = width[1]*srandu()
shape_new=shape.copy()
shape_new.shear(g1_offset, g2_offset)
break
except GMixRangeError:
pass
guess[i,0] = shape_new.g1
guess[i,1] = shape_new.g2
return guess
def __call__(self, n=1, **keys):
"""
center, shape are just distributed around zero
"""
fluxes=self.fluxes
log_fluxes=self.log_fluxes
nband=fluxes.size
np = 5+nband
guess = self.prior.sample(n)
if self.scaling=='linear':
guess[:,4] = self.T*(1.0 + 0.1*srandu(n))
else:
guess[:,4] = self.T + 0.1*srandu(n)
for band in xrange(nband):
if self.scaling=='linear':
guess[:,5+band] = fluxes[band]*(1.0 + 0.1*srandu(n))
else:
guess[:,5+band] = self.log_fluxes[band] + 0.1*srandu(n)
self._fix_guess(guess, self.prior)
if n==1:
guess=guess[0,:]
return guess
def __call__(self, n=None, get_sigmas=False, prior=None, ntry=10):
"""
center, shape are just distributed around zero
"""
if n is None:
n=1
is_scalar=True
else:
is_scalar=False
pars=self.pars
widths=self.widths
npars=pars.size
guess=numpy.zeros( (n, npars) )
# bigger than LOWVAL
for i in xrange(n):
ok=False
for itry in xrange(ntry):
guess[i,0] = pars[0] + widths[0]*srandu()
guess[i,1] = pars[1] + widths[1]*srandu()
# prevent from getting too large
guess_shape=get_shape_guess(pars[2],pars[3],
1,
widths[2:2+2],
max=0.8)
guess[i,2]=guess_shape[0,0]
guess[i,3]=guess_shape[0,1]
for j in xrange(4,npars):
guess[i,j] = pars[j] + widths[j]*srandu()
try:
lnp=prior.get_lnprob_scalar(guess[i,:])
if lnp != LOWVAL:
ok=True
break
except GMixRangeError as err:
pass
if not ok:
print(" had to sample....")
guess[j,:] = prior.sample()
if is_scalar:
guess=guess[0,:]
if get_sigmas:
return guess, self.pars_err
else:
return guess
def __call__(self, n=None, get_sigmas=False, prior=None):
"""
center is just distributed around zero
"""
if n is None:
n=1
is_scalar=True
else:
is_scalar=False
pars=self.pars
npars=pars.size
width = pars*0 + 0.1
guess=numpy.zeros( (n, npars) )
guess[:,0] = width[0]*srandu(n)
guess[:,1] = width[1]*srandu(n)
for j in xrange(n):
itr = 0
maxitr = 100
while itr < maxitr:
for i in xrange(2,npars):
if self.scaling=='linear' and i >= 4:
if pars[i] <= 0.0:
guess[j,:] = width[i]*srandu(1)
else:
guess[j,i] = pars[i]*(1.0 + width[i]*srandu(1))
else:
# we add to log pars!
guess[j,i] = pars[i] + width[i]*srandu(1)
if numpy.abs(guess[j,2]) < 1.0 \
and numpy.abs(guess[j,3]) < 1.0 \
and guess[j,2]*guess[j,2] + guess[j,3]*guess[j,3] < 1.0:
break
itr += 1
if prior is not None:
self._fix_guess(guess, prior)
if is_scalar:
guess=guess[0,:]
if get_sigmas:
return guess, self.pars_err
else:
return guess
def __call__(self, n=1, prior=None, **keys):
"""
center, shape are just distributed around zero
"""
fluxes=self.fluxes
nband=fluxes.size
np = 5+nband
guess=numpy.zeros( (n, np) )
guess[:,0] = 0.01*srandu(n)
guess[:,1] = 0.01*srandu(n)
guess[:,2] = 0.1*srandu(n)
guess[:,3] = 0.1*srandu(n)
if self.scaling=='linear':
guess[:,4] = self.T*(1.0 + 0.1*srandu(n))
fluxes=self.fluxes
for band in xrange(nband):
guess[:,5+band] = fluxes[band]*(1.0 + 0.1*srandu(n))
else:
guess[:,4] = self.log_T + 0.1*srandu(n)
for band in xrange(nband):
guess[:,5+band] = self.log_fluxes[band] + 0.1*srandu(n)
if prior is not None:
self._fix_guess(guess, prior)
if n==1:
guess=guess[0,:]
return guess
def __call__(self, n=None, get_sigmas=False, prior=None):
"""
get a random sample from the best points
"""
import random
if n is None:
is_scalar=True
n=1
else:
is_scalar=False
# choose randomly from best
#indices = self.lnp_sort[-n:]
#guess = self.trials[indices, :]
trials=self.trials
np = trials.shape[0]
rand_int = random.sample(xrange(np), n)
guess=trials[rand_int, :]
if prior is not None:
self._fix_guess(guess, prior)
w,=numpy.where(guess[:,4] <= 0.0)
if w.size > 0:
guess[w,4] = 0.05*srandu(w.size)
for i in xrange(5, self.npars):
w,=numpy.where(guess[:,i] <= 0.0)
if w.size > 0:
guess[w,i] = (1.0 + 0.1*srandu(w.size))
#print("guess from mcmc:")
#for i in xrange(n):
# print_pars(guess[i,:], front="%d: " % i)
if is_scalar:
guess=guess[0,:]
if get_sigmas:
return guess, self.sigmas
else:
return guess
def __call__old(self, n=None, get_sigmas=False, prior=None):
"""
center, shape are just distributed around zero
"""
if n is None:
n=1
is_scalar=True
else:
is_scalar=False
pars=self.pars
widths=self.widths
npars=pars.size
guess=numpy.zeros( (n, npars) )
# srandu() has std of 0.57..
guess[:,0] = pars[0] + widths[0]*srandu(n)
guess[:,1] = pars[1] + widths[1]*srandu(n)
guess_shape=get_shape_guess(pars[2],pars[3],n,widths[2:2+2])
guess[:,2]=guess_shape[:,0]
guess[:,3]=guess_shape[:,1]
for i in xrange(4,npars):
guess[:,i] = pars[i] + widths[i]*srandu(n)
if prior is not None:
self._fix_guess(guess, prior)
if is_scalar:
guess=guess[0,:]
if get_sigmas:
return guess, self.pars_err
else:
return guess
def get_image_center(im,wt,rng=None,ntry=10,T0=10.0,**em_pars):
"""
get the image center via fitting a single Gaussian with EM
lifted from ngmix bootstrappers by E. Sheldon
"""
if rng is None:
rng = np.random.RandomState()
em_pars['maxiter'] = em_pars.get('maxiter',4000)
em_pars['tol'] = em_pars.get('tol',5e-6)
srandu = lambda : rng.uniform(low=-1.0,high=1.0)
row = im.shape[0]/2.0
col = im.shape[1]/2.0
jac = ngmix.Jacobian(0.0,0.0,1.0,0.0,0.0,1.0)
obs = ngmix.Observation(im,weight=wt,jacobian=jac)
for i in xrange(ntry):
guess=[1.0*(1.0 + 0.01*srandu()),
row*(1.0+0.5*srandu()),
col*(1.0+0.5*srandu()),
T0/2.0*(1.0 + 0.1*srandu()),
0.1*ngmix.srandu(),
T0/2.0*(1.0 + 0.1*srandu())]
gm_guess = ngmix.GMix(pars=guess)
fitter = ngmix.em.fit_em(obs,gm_guess,**em_pars)
res = fitter.get_result()
if res['flags']==0:
break
if res['flags']==0:
gm = fitter.get_gmix()
row,col = gm.get_cen()
return row,col