def test_generate_dummy_labels_descriptor_wrong_input2():
with pytest.raises(IOError):
generate_dummy_label_descriptor(
jph(pfo_tmp_test, 'labels_descriptor.txt'),
list_labels=range(5),
list_roi_names=['1', '2', '3', '4', '5'],
list_colors_triplets=[[0, 0, 0], [1, 1, 1]])
def test_generate_none_list_colour_triples():
generate_dummy_label_descriptor(jph(pfo_tmp_test, 'labels_descriptor.txt'),
list_labels=range(5),
list_roi_names=['1', '2', '3', '4', '5'],
list_colors_triplets=None)
loaded_dummy_ldm = LabelsDescriptorManager(
jph(pfo_tmp_test, 'labels_descriptor.txt'))
for k in loaded_dummy_ldm.dict_label_descriptor.keys():
assert len(loaded_dummy_ldm.dict_label_descriptor[k][0]) == 3
for k_rgb in loaded_dummy_ldm.dict_label_descriptor[k][0]:
assert 0 <= k_rgb < 256
def test_generate_labels_descriptor_list_colors_triplets_None():
d = generate_dummy_label_descriptor(jph(pfo_tmp_test,
'dummy_labels_descriptor.txt'),
list_labels=range(5),
list_roi_names=None,
list_colors_triplets=[
[1, 1, 1],
] * 5)
for k in d.keys():
assert len(d[k][1]) == 3
def test_generate_labels_descriptor_general():
list_labels = [1, 2, 3, 4, 5]
list_color_triplets = [[1, 1, 1], [2, 2, 2], [3, 3, 3], [4, 4, 4],
[5, 5, 5]]
list_roi_names = ['one', 'two', 'three', 'four', 'five']
d = generate_dummy_label_descriptor(
jph(pfo_tmp_test, 'dummy_label_descriptor.txt'),
list_labels=list_labels,
list_roi_names=list_roi_names,
list_colors_triplets=list_color_triplets)
for k_num, k in enumerate(d.keys()):
assert int(k) == list_labels[k_num]
assert d[k][0] == list_color_triplets[k_num]
assert d[k][-1] == list_roi_names[k_num]
def test_generate_dummy_labels_descriptor_wrong_input1():
with pytest.raises(IOError):
generate_dummy_label_descriptor(jph(pfo_tmp_test,
'labels_descriptor.txt'),
list_labels=range(5),
list_roi_names=['1', '2'])
'C': False,
'Planetaruim': False,
'Buckle ellipsoids': True,
'Ellipsoids family': False,
'Cubes in the sky': False,
'Sandwich': False,
'Four-folds': False
}
gen.generate_figures(creation_list)
# ---- PATH MANAGER ----
pfi_input_segm = jph(root_dir, 'data_examples', 'ellipsoids_seg.nii.gz')
# ---- CREATE LABELS DESCRIPTOR FOR PHANTOM ellipsoids with 0 to 6 labels ----
pfi_labels_descriptor = jph(root_dir, 'data_examples',
'labels_descriptor_ellipsoids.txt')
generate_dummy_label_descriptor(pfi_labels_descriptor,
list_labels=[0, 1, 4, 5, 6, 7,
8]) # add extra labels to test
# ---- PERFORM the check ----
la = NiL()
in_descriptor_not_delineated, delineated_not_in_descriptor = la.check.missing_labels(
pfi_input_segm, pfi_labels_descriptor, pfi_where_to_save_the_log_file=None)
# Print expected to be seen in the terminal: set([8, 7]) set([2, 3])