def test_fetch_atlas_destrieux_2009_atlas():
datadir = os.path.join(tmpdir, 'destrieux_2009')
os.mkdir(datadir)
dummy = open(
os.path.join(datadir, 'destrieux2009_rois_labels_lateralized.csv'),
'w')
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(data_dir=tmpdir, verbose=0)
assert_equal(len(mock_url_request.urls), 1)
assert_equal(
bunch['maps'],
os.path.join(tmpdir, 'destrieux_2009',
'destrieux2009_rois_lateralized.nii.gz'))
dummy = open(os.path.join(datadir, 'destrieux2009_rois_labels.csv'), 'w')
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(lateralized=False,
data_dir=tmpdir,
verbose=0)
assert_equal(len(mock_url_request.urls), 1)
assert_equal(
bunch['maps'],
os.path.join(tmpdir, 'destrieux_2009', 'destrieux2009_rois.nii.gz'))
def test_fetch_atlas_destrieux_2009_warning_clean_labels(request_mocker):
"""Tests that ``fetch_atlas_destrieux_2009`` gives a FutureWarning
when ``clean_labels`` isn't specified explicitly.
"""
request_mocker.url_mapping["*destrieux2009.tgz"] = _destrieux_data()
with pytest.warns(FutureWarning,
match=("Default value for parameter `clean_labels` "
"will change from ``False`` to ``True`` "
"in Nilearn 0.10.")):
atlas.fetch_atlas_destrieux_2009()
assert request_mocker.url_count == 1
def test_fetch_atlas_destrieux_2009(tmp_path, request_mocker):
request_mocker.url_mapping["*destrieux2009.tgz"] = _destrieux_data()
bunch = atlas.fetch_atlas_destrieux_2009(data_dir=str(tmp_path), verbose=0)
assert request_mocker.url_count == 1
assert bunch['maps'] == str(tmp_path / 'destrieux_2009' /
'destrieux2009_rois_lateralized.nii.gz')
bunch = atlas.fetch_atlas_destrieux_2009(lateralized=False,
data_dir=str(tmp_path),
verbose=0)
assert request_mocker.url_count == 1
assert bunch['maps'] == str(tmp_path / 'destrieux_2009' /
'destrieux2009_rois.nii.gz')
def test_fetch_atlas_destrieux_2009_atlas():
datadir = os.path.join(tmpdir, "destrieux_2009")
os.mkdir(datadir)
dummy = open(os.path.join(datadir, "destrieux2009_rois_labels_lateralized.csv"), "w")
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(data_dir=tmpdir, verbose=0)
assert_equal(len(mock_url_request.urls), 1)
assert_equal(bunch["maps"], os.path.join(tmpdir, "destrieux_2009", "destrieux2009_rois_lateralized.nii.gz"))
dummy = open(os.path.join(datadir, "destrieux2009_rois_labels.csv"), "w")
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(lateralized=False, data_dir=tmpdir, verbose=0)
assert_equal(len(mock_url_request.urls), 1)
assert_equal(bunch["maps"], os.path.join(tmpdir, "destrieux_2009", "destrieux2009_rois.nii.gz"))
def test_fetch_atlas_destrieux_2009(tmp_path, request_mocker):
datadir = str(tmp_path / 'destrieux_2009')
os.mkdir(datadir)
dummy = open(
os.path.join(datadir, 'destrieux2009_rois_labels_lateralized.csv'),
'w')
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(data_dir=str(tmp_path), verbose=0)
assert len(tst.mock_url_request.urls) == 1
assert bunch['maps'] == str(tmp_path / 'destrieux_2009' /
'destrieux2009_rois_lateralized.nii.gz')
dummy = open(os.path.join(datadir, 'destrieux2009_rois_labels.csv'), 'w')
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(lateralized=False,
data_dir=str(tmp_path),
verbose=0)
assert len(tst.mock_url_request.urls) == 1
assert bunch['maps'] == os.path.join(datadir, 'destrieux2009_rois.nii.gz')
def test_fetch_atlas_destrieux_2009():
datadir = os.path.join(tst.tmpdir, 'destrieux_2009')
os.mkdir(datadir)
dummy = open(os.path.join(
datadir, 'destrieux2009_rois_labels_lateralized.csv'), 'w')
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(data_dir=tst.tmpdir,
verbose=0)
assert_equal(len(tst.mock_url_request.urls), 1)
assert_equal(bunch['maps'], os.path.join(
tst.tmpdir, 'destrieux_2009', 'destrieux2009_rois_lateralized.nii.gz'))
dummy = open(os.path.join(
datadir, 'destrieux2009_rois_labels.csv'), 'w')
dummy.write("name,index")
dummy.close()
bunch = atlas.fetch_atlas_destrieux_2009(
lateralized=False, data_dir=tst.tmpdir, verbose=0)
assert_equal(len(tst.mock_url_request.urls), 1)
assert_equal(bunch['maps'], os.path.join(
tst.tmpdir, 'destrieux_2009', 'destrieux2009_rois.nii.gz'))
def test_fetch_atlas_destrieux_2009(tmp_path, request_mocker, lateralized):
"""Tests for function `fetch_atlas_destrieux_2009`.
The atlas is fetched with different values for `lateralized`.
"""
request_mocker.url_mapping["*destrieux2009.tgz"] = _destrieux_data()
bunch = atlas.fetch_atlas_destrieux_2009(
lateralized=lateralized, data_dir=tmp_path, verbose=0
)
assert request_mocker.url_count == 1
name = '_lateralized' if lateralized else ""
assert bunch['maps'] == str(
tmp_path / 'destrieux_2009' / f'destrieux2009_rois{name}.nii.gz'
)
labels_img = set(np.unique(get_data(bunch.maps)))
labels = set([label.index for label in bunch.labels])
assert labels_img.issubset(labels)
def test_fetch_atlas_destrieux_2009(tmp_path, request_mocker, n_labels,
lateralized, clean_labels):
"""Tests for function `fetch_atlas_destrieux_2009`.
The atlas is fetched with different combinations of `lateralized`
and `n_labels`. In the case `n_labels=11`, the fetcher should be able
to remove the extra label ('10') not present in the atlas image.
"""
request_mocker.url_mapping["*destrieux2009.tgz"] = _destrieux_data(
n_labels=n_labels)
bunch = atlas.fetch_atlas_destrieux_2009(lateralized=lateralized,
data_dir=tmp_path,
verbose=0,
clean_labels=clean_labels)
assert request_mocker.url_count == 1
name = '_lateralized' if lateralized else ""
assert bunch['maps'] == str(tmp_path / 'destrieux_2009' /
f'destrieux2009_rois{name}.nii.gz')
labels_img = set(np.unique(get_data(bunch.maps)))
labels = set([label.index for label in bunch.labels])
if clean_labels:
assert labels_img == labels
else:
assert labels_img.issubset(labels)
