def test_Export_terminal(self):
import niprov
niprov.discover("testdata")
pth = os.path.abspath("testdata/dicom/T1.dcm")
provenance = niprov.ProvenanceContext().get().byLocation(pth)
niprov.print_(provenance)
def test_Discover(self):
import niprov
niprov.discover("testdata")
img = niprov.ProvenanceContext().get().byLocation(os.path.abspath("testdata/dicom/T1.dcm"))
self.assertEqual(img.provenance["dimensions"], [80, 80, 10])
img = niprov.ProvenanceContext().get().byLocation(os.path.abspath("testdata/eeg/stub.cnt"))
self.assertEqual(img.provenance["subject"], "Jane Doe")
def test_Log(self):
import niprov
niprov.discover('testdata')
newfile = os.path.abspath('temp/smoothed.test')
self.touch(newfile)
niprov.log(newfile, 'test', os.path.abspath('testdata/eeg/stub.cnt'))
img = niprov.ProvenanceContext().get().byLocation(newfile)
self.assertEqual(img.provenance['subject'], 'Jane Doe')
self.assertEqual(img.provenance['size'], os.path.getsize(newfile))
def test_Discover(self):
import niprov
niprov.discover('testdata')
img = niprov.ProvenanceContext().get().byLocation(
os.path.abspath('testdata/dicom/T1.dcm'))
self.assertEqual(img.provenance['dimensions'], [80, 80, 10])
img = niprov.ProvenanceContext().get().byLocation(
os.path.abspath('testdata/eeg/stub.cnt'))
self.assertEqual(img.provenance['subject'], 'Jane Doe')
def test_Narrative_file(self):
import niprov
niprov.discover('testdata')
pth = os.path.abspath('testdata/dicom/T1.dcm')
provenance = niprov.ProvenanceContext().get().byLocation(pth)
text = niprov.export(provenance, 'direct', 'narrated')
self.assertEqual(text, (
"This is a T1 image. It was recorded August 5, "
"2014. The participant's name is 05aug14test. It is 158KB in size. "
))
def test_Log(self):
import niprov
niprov.discover("testdata")
newfile = os.path.abspath("temp/smoothed.test")
self.touch(newfile)
niprov.log(newfile, "test", os.path.abspath("testdata/eeg/stub.cnt"))
img = niprov.ProvenanceContext().get().byLocation(newfile)
self.assertEqual(img.provenance["subject"], "Jane Doe")
self.assertEqual(img.provenance["size"], os.path.getsize(newfile))
def test_Narrative_file(self):
import niprov
niprov.discover("testdata")
pth = os.path.abspath("testdata/dicom/T1.dcm")
provenance = niprov.ProvenanceContext().get().byLocation(pth)
text = niprov.export(provenance, "direct", "narrated")
self.assertEqual(
text,
(
"This is a T1 image. It was recorded August 5, "
"2014. The participant's name is 05aug14test. It is 158KB in size. "
),
)
def test_bySubject(self):
import niprov
niprov.discover('testdata')
provenance = niprov.ProvenanceContext().get().bySubject('05aug14test')
niprov.print_(provenance)
def test_Export_terminal(self):
import niprov
niprov.discover('testdata')
pth = os.path.abspath('testdata/dicom/T1.dcm')
provenance = niprov.ProvenanceContext().get().byLocation(pth)
niprov.print_(provenance)
def test_bySubject(self):
import niprov
niprov.discover("testdata")
provenance = niprov.ProvenanceContext().get().bySubject("05aug14test")
niprov.print_(provenance)