def __init__(self, in_file=['path'], **options):
from nipype.interfaces.nipy.preprocess import SpaceTimeRealigner
realigner = SpaceTimeRealigner()
realigner.inputs.in_file = in_file
for ef in options:
setattr(realigner.inputs, ef, options[ef])
self.res = realigner.run()
def test_SpaceTimeRealigner_outputs():
output_map = dict(out_file=dict(),
par_file=dict(),
)
outputs = SpaceTimeRealigner.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_SpaceTimeRealigner_inputs():
input_map = dict(ignore_exception=dict(nohash=True,
usedefault=True,
),
in_file=dict(mandatory=True,
min_ver='0.4.0.dev',
),
slice_info=dict(requires=['slice_times'],
),
slice_times=dict(),
tr=dict(requires=['slice_times'],
),
)
inputs = SpaceTimeRealigner.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value