def test_evaluate(self):
es_size_2 = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=2,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
es_size_4 = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=4,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
metrics = [tf.keras.metrics.MeanSquaredError()]
es_size_2.fit(self.fit_examples, self.fit_label)
es_size_4.fit(self.fit_examples, self.fit_label)
es_2_mse = es_size_2.evaluate(self.fit_examples, self.fit_label, metrics)[0]
es_4_mse = es_size_4.evaluate(self.fit_examples, self.fit_label, metrics)[0]
self.assertLessEqual(es_4_mse, es_2_mse)
def _get_task_type(self):
"""Creates a `ps_pb2.Type` from the number of classes."""
if self.num_classes == 0:
return ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label=self._label_key))
if self.num_classes == 2:
return ps_pb2.Type(
binary_classification=ps_pb2.BinaryClassification(
label=self._label_key))
return ps_pb2.Type(
multi_class_classification=ps_pb2.MultiClassClassification(
label=self._label_key))
def testDoWithMajoritVoting(self):
exec_properties = self._exec_properties.copy()
exec_properties['tuner_fn'] = '%s.%s' % (
tuner_module.tuner_fn.__module__, tuner_module.tuner_fn.__name__)
exec_properties['metalearning_algorithm'] = 'majority_voting'
input_dict = self._input_dict.copy()
ps_type = ps_pb2.Type(
binary_classification=ps_pb2.BinaryClassification(label='class'))
ps = ps_pb2.ProblemStatement(
owner=['nitroml'],
tasks=[ps_pb2.Task(
name='mockdata_1',
type=ps_type,
)])
exec_properties['custom_config'] = json_utils.dumps({
'problem_statement':
text_format.MessageToString(message=ps, as_utf8=True),
})
hps_artifact = artifacts.KCandidateHyperParameters()
hps_artifact.uri = os.path.join(self._testdata_dir,
'MetaLearner.majority_voting',
'hparams_out')
input_dict['warmup_hyperparameters'] = [hps_artifact]
tuner = executor.Executor(self._context)
tuner.Do(input_dict=input_dict,
output_dict=self._output_dict,
exec_properties=exec_properties)
self._verify_output()
def testDoWithTunerFn(self):
self._exec_properties['tuner_fn'] = '%s.%s' % (
tuner_module.tuner_fn.__module__, tuner_module.tuner_fn.__name__)
ps_type = ps_pb2.Type(
binary_classification=ps_pb2.BinaryClassification(label='class'))
ps = ps_pb2.ProblemStatement(
owner=['nitroml'],
tasks=[ps_pb2.Task(
name='mockdata_1',
type=ps_type,
)])
self._exec_properties['custom_config'] = json_utils.dumps({
'problem_statement':
text_format.MessageToString(message=ps, as_utf8=True),
})
tuner = executor.Executor(self._context)
tuner.Do(input_dict=self._input_dict,
output_dict=self._output_dict,
exec_properties=self._exec_properties)
self._verify_output()
def problem_statement(self) -> ps_pb2.ProblemStatement:
"""Returns the ProblemStatement associated with this BenchmarkTask."""
return ps_pb2.ProblemStatement(
owner=['nitroml'],
tasks=[
ps_pb2.Task(
name='Test',
type=ps_pb2.Type(one_dimensional_regression=ps_pb2.
OneDimensionalRegression(label='test')),
)
])
def test_lifecycle(self):
es = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=3,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
test_dir = os.path.join(self.data_path, 'test_examples.tfrecord')
test_examples = np.asarray(
list(tf.data.TFRecordDataset(test_dir).as_numpy_iterator()))
test_examples_tensor = tf.convert_to_tensor(test_examples)
model_predictions = {}
for model_id, path in self.saved_model_paths.items():
reloaded_model = tf.saved_model.load(path)
model_predictions[model_id] = reloaded_model.signatures[
'serving_default'](test_examples_tensor)['output_0'].numpy()
want_weights = {'2': 0.3333333333333333, '4': 0.6666666666666666}
want_prediction = want_weights['2'] * model_predictions['2'] + want_weights[
'4'] * model_predictions['4']
mse = tf.keras.metrics.MeanSquaredError()
mse_scores = []
for pred in model_predictions.values():
mse_scores.append(mse(self.fit_label, pred))
mse.reset_states()
export_dir = os.path.join(
tempfile.mkdtemp(dir=absltest.get_default_test_tmpdir()),
'from_estimator')
es.fit(self.fit_examples, self.fit_label)
ensemble_predictions = es.predict(test_examples)
ensemble_mse = es.evaluate(self.fit_examples, self.fit_label, [mse])[0]
ensemble_path = es.save(export_dir)
reloaded_ensemble = tf.saved_model.load(ensemble_path)
loaded_ensemble_prediction = reloaded_ensemble.signatures[
'serving_default'](input=test_examples_tensor)['output'].numpy()
self.assertEqual(want_weights, es.weights)
self.assertEqual((10, 1), ensemble_predictions.shape)
np.testing.assert_array_almost_equal(want_prediction, ensemble_predictions,
1)
self.assertLessEqual(ensemble_mse, min(mse_scores))
np.testing.assert_array_almost_equal(ensemble_predictions,
loaded_ensemble_prediction, 1)
def problem_statement(self) -> ps_pb2.ProblemStatement:
"""Returns the ProblemStatement associated with this Task."""
# Supervised keys is a two-tuple.
_, target_key = self._dataset_builder.info.supervised_keys
return ps_pb2.ProblemStatement(
owner=['nitroml'],
tasks=[
ps_pb2.Task(
name=self.name,
type=ps_pb2.Type(
binary_classification=ps_pb2.BinaryClassification(
label=target_key)),
)
])
def test_get_predictions(self):
# TODO(liumich): improve test predictions with the following steps
# - reduce the number of samples to 4-5
# - manually compute MSE after each iteration for each partial ensemble
# - also output the ground truth (labels) so that we can verify
es = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=3,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
want_predictions = {
'0':
np.array([[268520.7], [172055.8], [172840.52], [203374.36],
[629715.5], [160393.], [242507.27], [156286.08],
[262261.7], [221169.3]]),
'1':
np.array([[262822.53], [168104.17], [168874.69], [198855.67],
[617477.56], [156652.53], [237280.08], [152620.],
[256676.81], [216328.45]]),
'2':
np.array([[247936.98], [158487.19], [159214.84], [187528.2],
[582864.9], [147672.52], [223815.3], [143864.3],
[242133.11], [204029.08]]),
'3':
np.array([[268206.75], [171761.81], [172546.36], [203073.86],
[629326.7], [160101.38], [242198.66], [155995.36],
[261948.98], [220865.14]]),
'4':
np.array([[257493.5], [164639.19], [165394.55], [194785.5],
[605169.06], [153412.9], [232453.73], [149459.73],
[251468.73], [211914.42]])
}
predictions = es._get_predictions_dict(self.fit_examples)
for model_id in predictions.keys():
np.testing.assert_array_almost_equal(want_predictions[model_id],
predictions[model_id], 1)
def test_predict_before_fit(self):
es = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=3,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
with self.assertRaisesRegex(
ValueError,
'Weights cannot be empty. Must call `fit` before `predict`.'):
_ = es.predict(self.fit_examples)
def test_calculate_weights(self):
es = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=4,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
ensemble_count = {'model_1': 1, 'model_2': 2, 'model_3': 1}
want_weights = {'model_1': 0.25, 'model_2': 0.5, 'model_3': 0.25}
es._calculate_weights(ensemble_count)
self.assertEqual(want_weights, es.weights)
def test_evaluate_metrics(self):
es = ensemble_selection.EnsembleSelection(
problem_statement=ps_pb2.ProblemStatement(tasks=[
ps_pb2.Task(
type=ps_pb2.Type(
one_dimensional_regression=ps_pb2.OneDimensionalRegression(
label='label')))
]),
saved_model_paths=self.saved_model_paths,
predict_fn=_test_predict_fn,
ensemble_size=3,
metric=tf.keras.metrics.MeanSquaredError(),
goal='minimize')
metrics = [
tf.keras.metrics.MeanSquaredError(),
tf.keras.metrics.MeanAbsoluteError(),
tf.keras.metrics.RootMeanSquaredError()
]
es.fit(self.fit_examples, self.fit_label)
ensemble_metrics = es.evaluate(self.fit_examples, self.fit_label, metrics)
self.assertLen(ensemble_metrics, len(metrics))