def alignment_detail(request, alignment_id):
alignment = get_object_or_404(Alignment, pk=alignment_id)
if request.method == 'POST':
if request.POST['action'] == 'delete':
alignment.delete()
return HttpResponseRedirect(reverse(deleted))
if request.POST['action'] == 'edit':
form = EditAlignmentForm(request.POST, instance=alignment)
if form.is_valid():
form.save()
return HttpResponseRedirect(alignment.get_absolute_url())
else:
return HttpResponseBadRequest("That input wasn't valid")
elif request.method == 'GET':
context = {}
if 'edit' in request.GET:
context['edit_form'] = EditAlignmentForm(instance=alignment)
elif 'delete' in request.GET:
context['show_delete_form'] = True
alignment_rows = alignment.rows.order_by("clade__lft").values(
"num", "name", "sequence")
pre = PreRenderer("noraseq/prerendered_row_tds.html", alignment)
for row in alignment_rows:
row['prerendered_tds'] = pre.render_row(row['sequence'])
context['alignment'] = alignment
context['alignment_rows'] = alignment_rows
context['header_row'] = range(1, alignment.length + 1)
context['num_cols'] = alignment.length
return render_to_response('noraseq/alignment_detail.html', context,
RequestContext(request))
def alignment_detail(request, alignment_id):
alignment = get_object_or_404(Alignment, pk=alignment_id)
if request.method == 'POST':
if request.POST['action'] == 'delete':
alignment.delete()
return HttpResponseRedirect(reverse(deleted))
if request.POST['action'] == 'edit':
form = EditAlignmentForm(request.POST, instance=alignment)
if form.is_valid():
form.save()
return HttpResponseRedirect(alignment.get_absolute_url())
else:
return HttpResponseBadRequest("That input wasn't valid")
elif request.method == 'GET':
context = {}
if 'edit' in request.GET:
context['edit_form'] = EditAlignmentForm(instance=alignment)
elif 'delete' in request.GET:
context['show_delete_form'] = True
alignment_rows = alignment.rows.order_by("clade__lft").values("num", "name", "sequence")
pre = PreRenderer("noraseq/prerendered_row_tds.html", alignment)
for row in alignment_rows:
row['prerendered_tds'] = pre.render_row(row['sequence'])
context['alignment'] = alignment
context['alignment_rows'] = alignment_rows
context['header_row'] = range(1,alignment.length+1)
context['num_cols'] = alignment.length
return render_to_response('noraseq/alignment_detail.html', context, RequestContext(request))
def prerender_tds(rows, alignment):
pre = PreRenderer("noraseq/prerendered_row_tds.html", alignment)
for row in rows:
row['prerendered_tds'] = pre.render_row(row['sequence'])
