def merge(proc_dir, job1, jobn, n, stride):
pipeline = Plumber()
map_jobn = NuMap(worker_num=jobn,
ordered=False,
stride=stride,
buffer=10000)
p1 = Piper(Worker(merge_star, (proc_dir, n)), parallel=map_jobn)
p2 = Piper(Worker(npasser), parallel=map_jobn)
pipeline.add_pipe((p1, p2))
return pipeline
def numap(self, sim, concrete_states):
num_violations = 0
from numap import NuMap
with PickleStreamWriter(self.fname) as writer:
for trace in NuMap(func=sim,
iterable=concrete_states,
ordered=False,
stride=1,
buffer=1000):
writer.write(trace)
if check_prop_violation(self.prop, trace):
num_violations += 1
def csort(proc_dir, job1, jobn, memn, n, stride):
csort_mem = "%sG" % memn
pipeline = Plumber()
map_jobn = NuMap(worker_num=jobn,
ordered=False,
stride=stride,
buffer=10000)
p1 = Piper(Worker(sambamba_csort, (proc_dir, n, csort_mem)),
parallel=map_jobn)
p2 = Piper(Worker(npasser), parallel=map_jobn)
pipeline.add_pipe((p1, p2))
return pipeline
#!/usr/bin/env python
# -*- coding: utf-8 -*-
#python /usr/lib/python2.6/site-packages/rpyc/servers/classic_server.py -m 'forking'
from numap import NuMap, imports
from papy.core import Piper
@imports(['os'])
def hello_from(inbox):
word = inbox[0]
up_pid = os.getpid()
return (word, up_pid)
somehost = NuMap(worker_num=0, worker_remote=[('localhost', 2)])
remote_piper = Piper(hello_from, parallel=somehost)
remote_piper([['hello', 'world', 'hi', 'folks']])
remote_piper.start()
print list(remote_piper)
def printer(element):
print element
return element
LEFT_INPUT = ('L0', 'L1', 'L2', 'L3')
RIGHT_INPUT = ('R0', 'R1', 'R2', 'R3')
# LEFT_INPUT RIGHT_INPUT
# | |
# |(printer) |(printer)
# | |
# left_iter right_iter
numap = NuMap(stride=2)
left_iter = numap.add_task(printer, LEFT_INPUT)
right_iter = numap.add_task(printer, RIGHT_INPUT)
numap.start()
# 2 2 2 2
# ------ ------ ------ ------
# order of input L0, L1, R0, R1, L2, L3, R2, R3
L0 = left_iter.next()
L1 = left_iter.next()
R0 = right_iter.next()
R1 = right_iter.next()
L2 = left_iter.next()
L3 = left_iter.next()
R2 = right_iter.next()
def preqc(proc_dir, job1, jobn, n, stride):
kmer_cfg = {
"id": "kmer",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "bash",
"script": "%s/%s" % (WORK_DIR, "work_kmer.sh"),
"in": (
"fastq1",
"fastq2",
),
"out": (
("main", "log"),
("kmer1", "txt"),
("kmer2", "txt"),
),
"params": {
"k": 6,
}
}
fastqc_cfg = {
"id": "fastqc",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "bash",
"script": "%s/%s" % (WORK_DIR, "work_fastqc.sh"),
"in": (
"fastq1",
"fastq2",
),
"out": (
("main", "log"),
("report", None),
),
"params": {}
}
map_job1 = NuMap(worker_num=job1,
ordered=False,
stride=stride,
buffer=10000)
map_jobn = NuMap(worker_num=jobn,
ordered=False,
stride=stride,
buffer=10000)
p1 = Piper(Worker(sample_fq, (
proc_dir,
1000000,
)), parallel=map_job1)
p2 = Piper(Worker(script, (kmer_cfg, )), parallel=map_job1)
p3 = Piper(Worker(script, (fastqc_cfg, )), parallel=map_job1)
p4 = Piper(Worker(npasser), parallel=map_job1)
# topology
pipeline = Plumber()
pipeline.add_pipe((p1, p2, p4))
pipeline.add_pipe((p1, p3, p4))
return pipeline
def printer(element):
print element
return element
LEFT_INPUT = ("L0", "L1", "L2", "L3")
RIGHT_INPUT = ("R0", "R1", "R2", "R3")
# LEFT_INPUT RIGHT_INPUT
# | |
# |(printer) |(printer)
# | |
# left_iter right_iter
numap = NuMap(stride=2)
left_iter = numap.add_task(printer, LEFT_INPUT)
right_iter = numap.add_task(printer, RIGHT_INPUT)
numap.start()
# 2 2 2 2
# ------ ------ ------ ------
# order of input L0, L1, R0, R1, L2, L3, R2, R3
L0 = left_iter.next()
L1 = left_iter.next()
R0 = right_iter.next()
R1 = right_iter.next()
L2 = left_iter.next()
L3 = left_iter.next()
R2 = right_iter.next()
# -*- coding: utf-8 -*-
from numap import NuMap
from itertools import izip
def left(element):
print "in left: %s" % (element,)
return element
def right(element):
print "in right: %s" % (element,)
return element
def root(element):
print "in root: %s" % (element,)
return element
LEFT = ('left_0', 'left_1', 'left_2', 'left_3', 'left_4')
RIGHT = ('right_0', 'right_1', 'right_2', 'right_3', 'right_4')
nu_chain = NuMap()
left_out = nu_chain.add_task(left, LEFT)
right_out = nu_chain.add_task(right, RIGHT)
root_out = nu_chain.add_task(root, izip(left_out, right_out))
nu_chain.start()
results = tuple(root_out)
assert results == (('left_0', 'right_0'), ('left_1', 'right_1'),
('left_2', 'right_2'), ('left_3', 'right_3'),
('left_4', 'right_4'))
# -*- coding: utf-8 -*-
from numap import NuMap
def source(element):
print "in source: %s" % (element, )
return element
def pipe(element):
print "in pipe: %s" % (element, )
return element
def sink(element):
print "in sink: %s" % (element, )
return element
ELEMENTS = ('element_0', 'element_1', 'element_2', 'element_3', 'element_4')
nu_chain = NuMap()
source_out = nu_chain.add_task(source, ELEMENTS)
pipe_out = nu_chain.add_task(pipe, source_out)
sink_out = nu_chain.add_task(sink, pipe_out)
nu_chain.start()
results = tuple(sink_out)
assert results == ('element_0', 'element_1', 'element_2', 'element_3',
'element_4')
arr = inbox[0]
arr.meta['timestamp'] = "%s_%s_%s@%s:%s:%s" % time.localtime()[0:6]
return arr
# Step 2 (wrapping function into workers)
# wraps clean_seq and defines a specific sequence type and fixes
cleaner = Worker(clean_seq, kwargs={'type': 'aa', 'fixes': [('.', '-')]})
# >>> arr = cleaner(['AGA.TA'])
# wraps timestamp
stamper = Worker(timestamp)
# >>> arr = stamper([arr])
# Step 3 (representing computational resources)
# creates a resource that allows to utilize all local processors
local_computer = NuMap()
# Step 4 (creating processing nodes)
# this attaches a single computational resource to the two processing nodes
# the stamper_node will be tracked i.e. it will store the results of computation
# in memory.
cleaner_node = Piper(cleaner, parallel=local_computer)
stamper_node = Piper(stamper, parallel=local_computer, track=True)
# Step 5 (constructing a workflow graph)
# we construct a workflow graph add the two processing nodes and define the
# connection between them.
workflow = Plumber()
workflow.add_pipe((cleaner_node, stamper_node))
# Step 6 (execute the workflow)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from numap import NuMap
def source(element):
print "in source: %s" % (element,)
return element
def pipe(element):
print "in pipe: %s" % (element,)
return element
def sink(element):
print "in sink: %s" % (element,)
return element
ELEMENTS = ('element_0', 'element_1', 'element_2', 'element_3', 'element_4')
nu_chain = NuMap()
source_out = nu_chain.add_task(source, ELEMENTS)
pipe_out = nu_chain.add_task(pipe, source_out)
sink_out = nu_chain.add_task(sink, pipe_out)
nu_chain.start()
results = tuple(sink_out)
assert results == ('element_0', 'element_1', 'element_2', 'element_3', 'element_4')
def final(proc_dir, job1, jobn, n, stride, full_model, genome_idx, genome_seq,
skip_mixcr, skip_cover):
## bamstat
bamstat_cfg = {
"id": "bamstat",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "bash",
"script": "%s/%s" % (WORK_DIR, "work_bamstat.sh"),
"in": ("alig_csort", ),
"out": (
("main", "log"),
("idxstat", "txt"),
("flgstat", "txt"),
),
"params": {}
}
virus_cfg = {
"id": "virus",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "bash",
"script": "%s/%s" % (WORK_DIR, "work_virus.sh"),
"in": ("alig_csort", ),
"out": (
("main", "log"),
("call", "txt"),
),
"params": {}
}
gzip_cfg = {
"id": "gzip",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "bash",
"script": "%s/%s" % (WORK_DIR, "work_gzip.sh"),
"in": (
"sj",
"junc_se",
"junc_pe",
),
"out": (("main", "log"), ),
"params": {}
}
cram_cfg = {
"id":
"pack",
"evaluator":
EVALUATOR,
"preamble":
PREAMBLE,
"dir":
proc_dir,
"executable":
"bash",
"script":
"%s/%s" % (WORK_DIR, "work_cram.sh"),
"in": (
"alig_csort",
"chim_pe_csort",
"chim_se_csort",
),
"out": (
("main", "log"),
("alig_csort", "cram"),
("chim_pe_csort", "cram"),
("chim_se_csort", "cram"),
),
"params": {
"genome": genome_seq,
"qbin": "2,10,20,25,30,35,40,42"
}
}
cover_cfg = {
"id":
"cover",
"evaluator":
EVALUATOR,
"preamble":
PREAMBLE,
"dir":
proc_dir,
"executable":
"python2",
"script":
"%s/%s" % (WORK_DIR, "work_coverage.py"),
"in": (
"alig_csort",
"chim_pe_csort",
"chim_se_csort",
),
"out": (
("main", "log"),
("alig_csort", "bw"),
("chim_pe_csort", "bw"),
("chim_se_csort", "bw"),
),
"params": {
"chrom_length": genome_idx / "chrNameLength.txt"
}
}
mixcr_cfg = {
"id":
"mixcr",
"evaluator":
EVALUATOR,
"preamble":
PREAMBLE,
"dir":
proc_dir,
"executable":
"bash",
"script":
"%s/%s" % (WORK_DIR, "work_mixcr.sh"),
"in": (
"alig_csort",
"unmap_1",
"unmap_2",
),
"out": (
("main", "log"),
("aln.rep", "txt"),
("fix1.rep", "txt"),
("fix2.rep", "txt"),
("ext.rep", "txt"),
("asm.rep", "txt"),
("index", "bin"),
("alig", "vdjca"),
("clone", "clns"),
("dir", None),
),
"params": {
"p": n,
"TRA": "chr14:21543538-22556037",
"TRB": "chr7:142290000-142820000",
"TRG": "chr7:38237000-38382000",
"IGK": "chr2:88789991-90313268",
"IGH": "chr14:105580000-106880000",
"IGL": "chr22:22020000-22927000",
}
}
## topology
pipeline = Plumber()
map_job1 = NuMap(worker_num=job1,
ordered=False,
stride=stride,
buffer=10000)
map_jobn = NuMap(worker_num=jobn,
ordered=False,
stride=stride,
buffer=10000)
p1 = Piper(Worker(ipasser), parallel=map_job1)
p2b = Piper(Worker(script, (cram_cfg, )), parallel=map_job1)
p2c = Piper(Worker(script, (gzip_cfg, )), parallel=map_job1)
p2d = Piper(Worker(script, (bamstat_cfg, )), parallel=map_job1)
p2e = Piper(Worker(script, (virus_cfg, )), parallel=map_job1)
p3 = Piper(Worker(npasser), parallel=map_job1)
pipeline.add_pipe((p1, p2b, p3))
pipeline.add_pipe((p1, p2c, p3))
pipeline.add_pipe((p1, p2d, p3))
pipeline.add_pipe((p1, p2e, p3))
if not skip_mixcr:
p2f = Piper(Worker(script, (mixcr_cfg, )), parallel=map_jobn)
pipeline.add_pipe((p1, p2f, p3))
if not skip_cover:
p2g = Piper(Worker(script, (cover_cfg, )), parallel=map_job1)
pipeline.add_pipe((p1, p2g, p3))
return pipeline
def quant(proc_dir, job1, jobn, n, stride, unstranded, prot_model, full_model,
linc_model):
## gene counting
prot_cfg = {
"id": "prot",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "python2",
"script": "%s/work_featc.py" % WORK_DIR,
"in": ("alig_nsort", ),
"out": (("main", "log"), ("cts", "cts"), ("tmp", None)),
"params": {
"paired_end": True,
"stranded": "0", # always unstranded
"duplicates": "", # count duplicates
"gtf": prot_model,
"n": n,
"xargs": ""
}
}
full_cfg = {
"id": "full",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "python2",
"script": "%s/work_featc.py" % WORK_DIR,
"in": ("alig_nsort", ),
"out": (("main", "log"), ("cts", "cts"), ("tmp", None)),
"params": {
"paired_end": True,
"stranded": "0"
if unstranded else "1", # first read is on the transcript strand
"duplicates": "", # count duplicates
"gtf": full_model,
"n": n,
"xargs": "",
}
}
linc_cfg = {
"id": "linc",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "python2",
"script": "%s/work_featc.py" % WORK_DIR,
"in": ("alig_nsort", ),
"out": (("main", "log"), ("cts", "cts"), ("tmp", None)),
"params": {
"paired_end": True,
"stranded": "0"
if unstranded else "1", # first read is on the transcript strand
"duplicates": "", # count duplicates
"gtf": linc_model,
"n": n,
"xargs": ""
}
}
cfgs = [prot_cfg, full_cfg, linc_cfg]
## topology
pipeline = Plumber()
map_job1 = NuMap(worker_num=job1,
ordered=False,
stride=stride,
buffer=10000)
map_job4 = NuMap(worker_num=job1 / 4,
ordered=False,
stride=stride,
buffer=10000)
p1 = Piper(Worker(ipasser), parallel=map_job1)
p2 = Piper(Worker(npasser), parallel=map_job1)
for cfg in cfgs:
p = Piper(Worker(script, (cfg, )), parallel=map_job4)
pipeline.add_pipe((p1, p, p2))
return pipeline
def align(proc_dir, job1, jobn, memn, stride, n, unstranded, genome_idx,
full_model, genome_seq, rrna_seq, merge_mode, star_mem,
alig_star_params, chim_star_params, prune, keep_fastq):
cutmrg_script = "work_bbcutmrg_pe.sh" if merge_mode == "bb" else "work_cutmrg_pe.sh"
cutmrg_cfg = {
"id":
"cutmrg",
"evaluator":
EVALUATOR,
"preamble":
PREAMBLE,
"dir":
proc_dir,
"executable":
"bash",
"script":
"%s/%s" % (WORK_DIR, cutmrg_script),
"in": (
"fastq1",
"fastq2",
),
"out": (
("main", "log"),
("cut", "log"),
("mrg", "log"),
("cutfq1", "fq"),
("cutfq2", "fq"),
("mrgfq1", "fq"),
("mrgfq2", "fq"),
("mrgfq3", "fq"),
("isize", "txt"),
("stats", "txt"),
("dir", None),
),
"params": {
"min_len": 25,
"cutxargs": "k=31 qskip=3 rieb=t tbo=t tpe=t",
"mrgxargs":
"k=31 prefilter=2 minoverlap=10 extend2=20 iterations=5",
"seq1": "AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC",
"seq2":
"AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT",
"rrna": rrna_seq,
"prune": prune,
"xmx": memn,
"p": n,
}
}
star_alig_params = {
"keep_fastq": keep_fastq,
"genomeDir": genome_idx,
"runThreadN": n,
"genomeLoad": star_mem,
## spliced alignment
"outFilterType": "BySJout",
"outSAMstrandField": "intronMotif" if unstranded else "None",
"alignSJoverhangMin": 8,
"alignSJDBoverhangMin": 3,
"scoreGenomicLengthLog2scale": 0,
"alignIntronMin": 20,
"alignIntronMax": 1000000,
"alignMatesGapMax": 1000000,
}
star_alig_params.update(alig_star_params)
star_chim_params = {
"keep_fastq": keep_fastq,
"genomeDir": genome_idx,
"runThreadN": n,
"genomeLoad": star_mem,
"outFilterType": "Normal",
## chimeric alignment
"alignIntronMax": 150000,
"alignMatesGapMax": 150000,
"chimSegmentMin": 10,
"chimJunctionOverhangMin": 1,
"chimScoreSeparation": 0,
"chimScoreJunctionNonGTAG": 0,
"chimScoreDropMax": 1000,
"chimScoreMin": 1,
}
star_chim_params.update(chim_star_params)
star_alig_cfg = {
"id": "alig",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "python2",
"script": "%s/%s" % (WORK_DIR, "work_star_alig_pe.py"),
"in": (
"cutfq1",
"cutfq2",
),
"out": (
("main", "log"),
("dir", None),
),
"params": star_alig_params
}
star_chim_cfg = {
"id": "chim",
"evaluator": EVALUATOR,
"preamble": PREAMBLE,
"dir": proc_dir,
"executable": "python2",
"script": "%s/%s" % (WORK_DIR, "work_star_chim_pe.py"),
"in": (
"mrgfq1",
"mrgfq2",
"mrgfq3",
),
"out": (
("main", "log"),
("dir", None),
),
"params": star_chim_params
}
pipeline = Plumber()
map_job1 = NuMap(worker_num=job1,
ordered=False,
stride=stride,
buffer=10000)
map_jobn = NuMap(worker_num=jobn,
ordered=False,
stride=stride,
buffer=10000)
p1 = Piper(Worker(link_fq, (proc_dir, )), parallel=map_job1)
p2 = Piper(Worker(script, (cutmrg_cfg, )),
parallel=(map_jobn if merge_mode == "bb" else map_job1))
p3a = Piper(Worker(script, (star_alig_cfg, )), parallel=map_jobn)
p3b = Piper(Worker(script, (star_chim_cfg, )), parallel=map_jobn)
p4a = Piper(Worker(move_alig_star, (proc_dir, )), parallel=map_job1)
p4b = Piper(Worker(move_chim_star, (proc_dir, )), parallel=map_job1)
p5 = Piper(Worker(npasser), parallel=map_jobn)
pipeline.add_pipe((p1, p2, p3a, p4a, p5))
pipeline.add_pipe((p1, p2, p3b, p4b, p5))
return pipeline
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from numap import NuMap
from time import sleep
SLEEP = 'sleep'
AWAKE = 'awake'
def sleeper(element):
if element == SLEEP:
sleep(2)
return element
ELEMENTS = (AWAKE, SLEEP, AWAKE, AWAKE)
print "if ordered results are in the order of the input"
result_iterator = NuMap(sleeper, ELEMENTS, ordered=True)
results = tuple(result_iterator)
print 'got: ', results
print "if not ordered results are in the order of the computation"
result_iterator = NuMap(sleeper, ELEMENTS, ordered=False)
results = tuple(result_iterator)
print 'got: ', results
def resources(args):
size, worker_num = args
rsrc = NuMap(worker_num=worker_num)
return rsrc
from papy.util.func import dump_item, load_item
from numap import NuMap, imports
from papy.core import Piper, Worker
@imports(['os'])
def upstream(inbox):
up_pid = os.getpid()
return str(up_pid)
@imports(['os'])
def downstream(inbox):
up_pid = inbox[0]
down_pid = os.getpid()
return "%s->%s" % (up_pid, down_pid)
host1 = NuMap()
host2 = NuMap()
up = Worker((upstream, dump_item))
dn = Worker((load_item, downstream))
up_ = Piper(up, parallel=host1)
dn_ = Piper(dn, parallel=host2)
up_([['hello', 'world', 'hi', 'folks']])
dn_([up_])
up_.start()
dn_.start()
print list(dn_)
SLEEP = "sleep"
AWAKE = "awake"
def sleeper(element):
if element == SLEEP:
sleep(2)
return element
ELEMENTS = (AWAKE, SLEEP, AWAKE, AWAKE)
print "results, which timeout are **not** skipped"
result_iterator = NuMap(sleeper, ELEMENTS, skip=False)
print result_iterator.next(timeout=3)
try:
result_iterator.next(timeout=1)
except TimeoutError:
print "timout"
print result_iterator.next(timeout=3)
print result_iterator.next(timeout=3)
print result_iterator.next(timeout=3)
print "got 4 results\n"
print "results, which timeout are skipped"
result_iterator = NuMap(sleeper, ELEMENTS, skip=True)
print result_iterator.next(timeout=3)
try:
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from numap import NuMap
def hello_world(element, *args, **kwargs):
print "Hello element: %s " % element,
print "Hello args: %s" % (args, ),
print "Hello kwargs: %s" % (kwargs, )
return element
ELEMENTS = ('element_0', 'element_1', 'element_2', 'element_3', 'element_4')
result_iterator = NuMap(hello_world,
ELEMENTS,
args=('arg_0', 'arg_1'),
kwargs={
'kwarg_0': 'val_0',
'kwarg_1': 'val_1'
})
results = tuple(result_iterator)
assert results == ('element_0', 'element_1', 'element_2', 'element_3',
'element_4')
def left(element):
print "in left: %s" % (element, )
return element
def right(element):
print "in right: %s" % (element, )
return element
def root(element):
print "in root: %s" % (element, )
return element
LEFT = ('left_0', 'left_1', 'left_2', 'left_3', 'left_4')
RIGHT = ('right_0', 'right_1', 'right_2', 'right_3', 'right_4')
nu_chain = NuMap()
left_out = nu_chain.add_task(left, LEFT)
right_out = nu_chain.add_task(right, RIGHT)
root_out = nu_chain.add_task(root, izip(left_out, right_out))
nu_chain.start()
results = tuple(root_out)
assert results == (('left_0', 'right_0'), ('left_1', 'right_1'),
('left_2', 'right_2'), ('left_3', 'right_3'), ('left_4',
'right_4'))
from time import sleep
SLEEP = 'sleep'
AWAKE = 'awake'
def sleeper(element):
if element == SLEEP:
sleep(2)
return element
ELEMENTS = (AWAKE, SLEEP, AWAKE, AWAKE)
print "results, which timeout are **not** skipped"
result_iterator = NuMap(sleeper, ELEMENTS, skip=False)
print result_iterator.next(timeout=3)
try:
result_iterator.next(timeout=1)
except TimeoutError:
print 'timout'
print result_iterator.next(timeout=3)
print result_iterator.next(timeout=3)
print result_iterator.next(timeout=3)
print "got 4 results\n"
print "results, which timeout are skipped"
result_iterator = NuMap(sleeper, ELEMENTS, skip=True)
print result_iterator.next(timeout=3)
try:
result_iterator.next(timeout=1)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from numap import NuMap
def hello_world(element):
print("Hello element: %s" % element)
return element
ELEMENTS = ('element_0', 'element_1', 'element_2', 'element_3', 'element_4')
result_iterator = NuMap(hello_world, ELEMENTS)
results = tuple(result_iterator)
assert results == ('element_0', 'element_1', 'element_2', 'element_3',
'element_4')
from numap import NuMap
from papy.core import Dagger, Piper
def l33t(inbox):
word = inbox[0]
return word.replace('e', '3').replace('o', '0')
def l33ter(inbox):
word = inbox[0]
return word.replace('l', '1')
# execution endgine
numap = NuMap()
# function nodes
l33t_piper = Piper(l33t, parallel=numap)
l33ter_piper = Piper(l33ter, parallel=numap)
# topology
pipeline = Dagger()
pipeline.add_pipe((l33t_piper, l33ter_piper))
end = pipeline.get_outputs()[0]
# runtime
pipeline.connect([['hello', 'world']])
pipeline.start()
print list(end)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from numap import NuMap, imports
#python /usr/lib/python2.6/site-packages/rpyc/servers/classic_server.py -m 'forking'
@imports(['os'])
def hello_remote(element, ):
return "got%s" % element
ELEMENTS = (0, 1, 2, 3, 4)
result_iterator = NuMap(hello_remote, ELEMENTS, worker_num=0, \
worker_remote=[('localhost', 2)])
results = tuple(result_iterator)
print results
