def _handle_df_col_filter(self, lhs_name, rhs, assign):
# find df['col2'] = df['col1'][arr]
# since columns should have the same size, output is filled with NaNs
# TODO: check for float, make sure col1 and col2 are in the same df
if (rhs.op == 'getitem' and rhs.value.name in self.df_cols
and lhs_name in self.df_cols
and self.is_bool_arr(rhs.index.name)):
lhs = assign.target
in_arr = rhs.value
index_var = rhs.index
f_blocks = compile_to_numba_ir(
_column_filter_impl_float, {
'numba': numba,
'np': np
}, self.typingctx,
(self.typemap[lhs.name], self.typemap[in_arr.name],
self.typemap[index_var.name]), self.typemap,
self.calltypes).blocks
first_block = min(f_blocks.keys())
replace_arg_nodes(f_blocks[first_block], [lhs, in_arr, index_var])
alloc_nodes = gen_np_call('empty_like', np.empty_like, lhs,
[in_arr], self.typingctx, self.typemap,
self.calltypes)
f_blocks[
first_block].body = alloc_nodes + f_blocks[first_block].body
return f_blocks
def _mk_stencil_parfor(self, label, in_args, out_arr, stencil_ir,
index_offsets, target, return_type, stencil_func,
arg_to_arr_dict):
""" Converts a set of stencil kernel blocks to a parfor.
"""
gen_nodes = []
stencil_blocks = stencil_ir.blocks
if config.DEBUG_ARRAY_OPT == 1:
print("_mk_stencil_parfor", label, in_args, out_arr, index_offsets,
return_type, stencil_func, stencil_blocks)
ir_utils.dump_blocks(stencil_blocks)
in_arr = in_args[0]
# run copy propagate to replace in_args copies (e.g. a = A)
in_arr_typ = self.typemap[in_arr.name]
in_cps, out_cps = ir_utils.copy_propagate(stencil_blocks, self.typemap)
name_var_table = ir_utils.get_name_var_table(stencil_blocks)
ir_utils.apply_copy_propagate(
stencil_blocks,
in_cps,
name_var_table,
self.typemap,
self.calltypes)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after copy_propagate")
ir_utils.dump_blocks(stencil_blocks)
ir_utils.remove_dead(stencil_blocks, self.func_ir.arg_names, stencil_ir,
self.typemap)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after removing dead code")
ir_utils.dump_blocks(stencil_blocks)
# create parfor vars
ndims = self.typemap[in_arr.name].ndim
scope = in_arr.scope
loc = in_arr.loc
parfor_vars = []
for i in range(ndims):
parfor_var = ir.Var(scope, mk_unique_var(
"$parfor_index_var"), loc)
self.typemap[parfor_var.name] = types.intp
parfor_vars.append(parfor_var)
start_lengths, end_lengths = self._replace_stencil_accesses(
stencil_blocks, parfor_vars, in_args, index_offsets, stencil_func,
arg_to_arr_dict)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after replace stencil accesses")
ir_utils.dump_blocks(stencil_blocks)
# create parfor loop nests
loopnests = []
equiv_set = self.array_analysis.get_equiv_set(label)
in_arr_dim_sizes = equiv_set.get_shape(in_arr)
assert ndims == len(in_arr_dim_sizes)
for i in range(ndims):
last_ind = self._get_stencil_last_ind(in_arr_dim_sizes[i],
end_lengths[i], gen_nodes, scope, loc)
start_ind = self._get_stencil_start_ind(
start_lengths[i], gen_nodes, scope, loc)
# start from stencil size to avoid invalid array access
loopnests.append(numba.parfor.LoopNest(parfor_vars[i],
start_ind, last_ind, 1))
# We have to guarantee that the exit block has maximum label and that
# there's only one exit block for the parfor body.
# So, all return statements will change to jump to the parfor exit block.
parfor_body_exit_label = max(stencil_blocks.keys()) + 1
stencil_blocks[parfor_body_exit_label] = ir.Block(scope, loc)
exit_value_var = ir.Var(scope, mk_unique_var("$parfor_exit_value"), loc)
self.typemap[exit_value_var.name] = return_type.dtype
# create parfor index var
for_replacing_ret = []
if ndims == 1:
parfor_ind_var = parfor_vars[0]
else:
parfor_ind_var = ir.Var(scope, mk_unique_var(
"$parfor_index_tuple_var"), loc)
self.typemap[parfor_ind_var.name] = types.containers.UniTuple(
types.intp, ndims)
tuple_call = ir.Expr.build_tuple(parfor_vars, loc)
tuple_assign = ir.Assign(tuple_call, parfor_ind_var, loc)
for_replacing_ret.append(tuple_assign)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after creating parfor index var")
ir_utils.dump_blocks(stencil_blocks)
# empty init block
init_block = ir.Block(scope, loc)
if out_arr == None:
in_arr_typ = self.typemap[in_arr.name]
shape_name = ir_utils.mk_unique_var("in_arr_shape")
shape_var = ir.Var(scope, shape_name, loc)
shape_getattr = ir.Expr.getattr(in_arr, "shape", loc)
self.typemap[shape_name] = types.containers.UniTuple(types.intp,
in_arr_typ.ndim)
init_block.body.extend([ir.Assign(shape_getattr, shape_var, loc)])
zero_name = ir_utils.mk_unique_var("zero_val")
zero_var = ir.Var(scope, zero_name, loc)
if "cval" in stencil_func.options:
cval = stencil_func.options["cval"]
# TODO: Loosen this restriction to adhere to casting rules.
if return_type.dtype != typing.typeof.typeof(cval):
raise ValueError("cval type does not match stencil return type.")
temp2 = return_type.dtype(cval)
else:
temp2 = return_type.dtype(0)
full_const = ir.Const(temp2, loc)
self.typemap[zero_name] = return_type.dtype
init_block.body.extend([ir.Assign(full_const, zero_var, loc)])
so_name = ir_utils.mk_unique_var("stencil_output")
out_arr = ir.Var(scope, so_name, loc)
self.typemap[out_arr.name] = numba.types.npytypes.Array(
return_type.dtype,
in_arr_typ.ndim,
in_arr_typ.layout)
dtype_g_np_var = ir.Var(scope, mk_unique_var("$np_g_var"), loc)
self.typemap[dtype_g_np_var.name] = types.misc.Module(np)
dtype_g_np = ir.Global('np', np, loc)
dtype_g_np_assign = ir.Assign(dtype_g_np, dtype_g_np_var, loc)
init_block.body.append(dtype_g_np_assign)
dtype_np_attr_call = ir.Expr.getattr(dtype_g_np_var, return_type.dtype.name, loc)
dtype_attr_var = ir.Var(scope, mk_unique_var("$np_attr_attr"), loc)
self.typemap[dtype_attr_var.name] = types.functions.NumberClass(return_type.dtype)
dtype_attr_assign = ir.Assign(dtype_np_attr_call, dtype_attr_var, loc)
init_block.body.append(dtype_attr_assign)
stmts = ir_utils.gen_np_call("full",
np.full,
out_arr,
[shape_var, zero_var, dtype_attr_var],
self.typingctx,
self.typemap,
self.calltypes)
equiv_set.insert_equiv(out_arr, in_arr_dim_sizes)
init_block.body.extend(stmts)
self.replace_return_with_setitem(stencil_blocks, exit_value_var,
parfor_body_exit_label)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after replacing return")
ir_utils.dump_blocks(stencil_blocks)
setitem_call = ir.SetItem(out_arr, parfor_ind_var, exit_value_var, loc)
self.calltypes[setitem_call] = signature(
types.none, self.typemap[out_arr.name],
self.typemap[parfor_ind_var.name],
self.typemap[out_arr.name].dtype
)
stencil_blocks[parfor_body_exit_label].body.extend(for_replacing_ret)
stencil_blocks[parfor_body_exit_label].body.append(setitem_call)
# simplify CFG of parfor body (exit block could be simplified often)
# add dummy return to enable CFG
stencil_blocks[parfor_body_exit_label].body.append(ir.Return(0,
ir.Loc("stencilparfor_dummy", -1)))
stencil_blocks = ir_utils.simplify_CFG(stencil_blocks)
stencil_blocks[max(stencil_blocks.keys())].body.pop()
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after adding SetItem")
ir_utils.dump_blocks(stencil_blocks)
pattern = ('stencil', [start_lengths, end_lengths])
parfor = numba.parfor.Parfor(loopnests, init_block, stencil_blocks,
loc, parfor_ind_var, equiv_set, pattern, self.flags)
gen_nodes.append(parfor)
gen_nodes.append(ir.Assign(out_arr, target, loc))
return gen_nodes
def _mk_stencil_parfor(self, label, in_args, out_arr, stencil_blocks,
index_offsets, target, return_type, stencil_func,
arg_to_arr_dict):
""" Converts a set of stencil kernel blocks to a parfor.
"""
gen_nodes = []
if config.DEBUG_ARRAY_OPT == 1:
print("_mk_stencil_parfor", label, in_args, out_arr, index_offsets,
return_type, stencil_func, stencil_blocks)
ir_utils.dump_blocks(stencil_blocks)
in_arr = in_args[0]
# run copy propagate to replace in_args copies (e.g. a = A)
in_arr_typ = self.typemap[in_arr.name]
in_cps, out_cps = ir_utils.copy_propagate(stencil_blocks, self.typemap)
name_var_table = ir_utils.get_name_var_table(stencil_blocks)
ir_utils.apply_copy_propagate(stencil_blocks, in_cps, name_var_table,
self.typemap, self.calltypes)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after copy_propagate")
ir_utils.dump_blocks(stencil_blocks)
ir_utils.remove_dead(stencil_blocks, self.func_ir.arg_names,
self.typemap)
if config.DEBUG_ARRAY_OPT == 1:
print("stencil_blocks after removing dead code")
ir_utils.dump_blocks(stencil_blocks)
# create parfor vars
ndims = self.typemap[in_arr.name].ndim
scope = in_arr.scope
loc = in_arr.loc
parfor_vars = []
for i in range(ndims):
parfor_var = ir.Var(scope, mk_unique_var("$parfor_index_var"), loc)
self.typemap[parfor_var.name] = types.intp
parfor_vars.append(parfor_var)
start_lengths, end_lengths = self._replace_stencil_accesses(
stencil_blocks, parfor_vars, in_args, index_offsets, stencil_func,
arg_to_arr_dict)
# create parfor loop nests
loopnests = []
equiv_set = self.array_analysis.get_equiv_set(label)
in_arr_dim_sizes = equiv_set.get_shape(in_arr.name)
assert ndims == len(in_arr_dim_sizes)
for i in range(ndims):
last_ind = self._get_stencil_last_ind(in_arr_dim_sizes[i],
end_lengths[i], gen_nodes,
scope, loc)
start_ind = self._get_stencil_start_ind(start_lengths[i],
gen_nodes, scope, loc)
# start from stencil size to avoid invalid array access
loopnests.append(
numba.parfor.LoopNest(parfor_vars[i], start_ind, last_ind, 1))
# replace return value to setitem to output array
return_node = stencil_blocks[max(stencil_blocks.keys())].body.pop()
assert isinstance(return_node, ir.Return)
last_node = stencil_blocks[max(stencil_blocks.keys())].body.pop()
while not isinstance(last_node, ir.Assign) or not isinstance(
last_node.value, ir.Expr) or not last_node.value.op == 'cast':
last_node = stencil_blocks[max(stencil_blocks.keys())].body.pop()
assert isinstance(last_node, ir.Assign)
assert isinstance(last_node.value, ir.Expr)
assert last_node.value.op == 'cast'
return_val = last_node.value.value
# create parfor index var
if ndims == 1:
parfor_ind_var = parfor_vars[0]
else:
parfor_ind_var = ir.Var(scope,
mk_unique_var("$parfor_index_tuple_var"),
loc)
self.typemap[parfor_ind_var.name] = types.containers.UniTuple(
types.intp, ndims)
tuple_call = ir.Expr.build_tuple(parfor_vars, loc)
tuple_assign = ir.Assign(tuple_call, parfor_ind_var, loc)
stencil_blocks[max(
stencil_blocks.keys())].body.append(tuple_assign)
# empty init block
init_block = ir.Block(scope, loc)
if out_arr == None:
in_arr_typ = self.typemap[in_arr.name]
shape_name = ir_utils.mk_unique_var("in_arr_shape")
shape_var = ir.Var(scope, shape_name, loc)
shape_getattr = ir.Expr.getattr(in_arr, "shape", loc)
self.typemap[shape_name] = types.containers.UniTuple(
types.intp, in_arr_typ.ndim)
init_block.body.extend([ir.Assign(shape_getattr, shape_var, loc)])
zero_name = ir_utils.mk_unique_var("zero_val")
zero_var = ir.Var(scope, zero_name, loc)
if "cval" in stencil_func.options:
cval = stencil_func.options["cval"]
# TODO: Loosen this restriction to adhere to casting rules.
if return_type.dtype != typing.typeof.typeof(cval):
raise ValueError(
"cval type does not match stencil return type.")
temp2 = return_type.dtype(cval)
else:
temp2 = return_type.dtype(0)
full_const = ir.Const(temp2, loc)
self.typemap[zero_name] = return_type.dtype
init_block.body.extend([ir.Assign(full_const, zero_var, loc)])
so_name = ir_utils.mk_unique_var("stencil_output")
out_arr = ir.Var(scope, so_name, loc)
self.typemap[out_arr.name] = numba.types.npytypes.Array(
return_type.dtype, in_arr_typ.ndim, in_arr_typ.layout)
dtype_g_np_var = ir.Var(scope, mk_unique_var("$np_g_var"), loc)
self.typemap[dtype_g_np_var.name] = types.misc.Module(np)
dtype_g_np = ir.Global('np', np, loc)
dtype_g_np_assign = ir.Assign(dtype_g_np, dtype_g_np_var, loc)
init_block.body.append(dtype_g_np_assign)
dtype_np_attr_call = ir.Expr.getattr(dtype_g_np_var,
return_type.dtype.name, loc)
dtype_attr_var = ir.Var(scope, mk_unique_var("$np_attr_attr"), loc)
self.typemap[dtype_attr_var.name] = types.functions.NumberClass(
return_type.dtype)
dtype_attr_assign = ir.Assign(dtype_np_attr_call, dtype_attr_var,
loc)
init_block.body.append(dtype_attr_assign)
stmts = ir_utils.gen_np_call("full", np.full, out_arr,
[shape_var, zero_var, dtype_attr_var],
self.typingctx, self.typemap,
self.calltypes)
equiv_set.insert_equiv(out_arr, in_arr_dim_sizes)
init_block.body.extend(stmts)
setitem_call = ir.SetItem(out_arr, parfor_ind_var, return_val, loc)
self.calltypes[setitem_call] = signature(
types.none, self.typemap[out_arr.name],
self.typemap[parfor_ind_var.name],
self.typemap[out_arr.name].dtype)
stencil_blocks[max(stencil_blocks.keys())].body.append(setitem_call)
parfor = numba.parfor.Parfor(loopnests, init_block, stencil_blocks,
loc, parfor_ind_var, equiv_set)
parfor.patterns = [('stencil', [start_lengths, end_lengths])]
gen_nodes.append(parfor)
gen_nodes.append(ir.Assign(out_arr, target, loc))
return gen_nodes