def gaussian_filter(in_, out, y, x, width, height):
in_array = carray(in_, (height, width, 3))
out_array = carray(out, (height, width, 3))
for k in range(3):
sum_ = 0.
for p in range(-2, 3):
for q in range(-2, 3):
sum_ += gKernel[p+2, q+2] * in_array[y+p,x+q,k]
out_array[y, x, k] = sum_
def _calc_vanmarcke1975_ccdf(n, a):
"""Calculate the Vanmarcke (1975) complementary CDF.
Parameters
----------
n : int
Length of arguments
a : list of floats
Arguments specifying:
- function value `x`
- number of zero crossing
- effective bandwdith
Returns
-------
ccdf : float
Complementary CDF value
"""
args = numba.carray(a, n)
x = args[0]
num_zero_crossings = args[1]
bandwidth_eff = args[2]
return (1 - (1 - np.exp(-x ** 2 / 2)) * np.exp(-1 * num_zero_crossings * (
1 - np.exp(-1 * np.sqrt(np.pi / 2) * bandwidth_eff * x)) /
(np.exp(x ** 2 / 2) - 1)))
def __init__(self, type, value, subslices, nopython, **kwargs):
super(NativeSliceNode, self).__init__(**kwargs)
value = nodes.CloneableNode(value)
self.type = type
self.value = value
self.subslices = subslices
self.shape_type = numba.carray(npy_intp, type.ndim)
self.nopython = nopython
if not nopython:
self.build_array_node = self.build_array()
else:
self.build_array_node = None
def __init__(self, array_type, operands, **kwargs):
super(BroadcastNode, self).__init__(**kwargs)
self.operands = operands
self.shape_type = numba.carray(npy_intp, array_type.ndim)
self.array_type = array_type
self.type = npy_intp.pointer()
self.broadcast_retvals = {}
self.check_errors = []
for op in operands:
if op.type.is_array:
# TODO: Put the raise code in a separate basic block and jump
return_value = nodes.LLVMValueRefNode(int_, None)
check_error = nodes.CheckErrorNode(
return_value, 0, exc_type=ValueError,
exc_msg="Shape mismatch while broadcasting")
self.broadcast_retvals[op] = return_value
self.check_errors.append(check_error)
def _calc_cartwright_pf(n, a):
"""Integrand for the Cartwright and Longuet-Higgins peak factor.
Parameters
----------
n : int
Length of arguments
a : list of floats
Arguments specifying:
- function value `x`
- number of extrema
- bandwdith
Returns
-------
dpf : float
Portion of the peak factor
"""
args = numba.carray(a, n)
x = args[0]
num_extrema = args[1]
bandwidth = args[2]
return 1. - (1. - bandwidth * np.exp(-x * x)) ** num_extrema
def func_to_apply_c(x, y, z, field_value_):
field_value = carray(field_value_, (6, )) # field is array of 6 elements
# (Ex, Ey, Ez, Bx, By, Bz)
field_value[1] *= np.cos(np.pi / 20.0 * x)**2 # Ey
field_value[5] *= np.cos(np.pi / 20.0 * x)**2 # Bz
def _S(outArr, q):
Q = carray(q, (V, ))
ret = carray(outArr, (V, ))
SQ = Sjit(Q)
for i in range(V):
ret[i] = SQ[i]
def wrapper(z_, x_, y_):
z = carray(z_, 1)[0]
x = carray(x_, 1)[0]
y = carray(y_, 1)[0]
jitfunc(z, x, y)
def wrapped(in_values_ptr, len_in, out_values_ptr, len_out, data):
in_values = carray(in_values_ptr, (len_in,), dtype=float64)
out_values = carray(out_values_ptr, (len_out,), dtype=float64)
jitted_function(in_values, out_values)
return 1
def foo(ptr, n):
base = carray(ptr, n)
return calc(base)
def next_double(st):
bit_gen_state = carray(st, (2, ), dtype=np.uint64)
return (np.uint64(splitmix_next(bit_gen_state)) >>
np.uint64(11)) / 9007199254740992.0
def _vega_integrand(u, params):
k, t, v, kappa, a, nu, rho = carray(params, (7, ))
psi_1, psi_2 = _heston_psi(u - 0.5j, t, kappa, a, nu, rho)
return common._vega_integrand(u, k, v, psi_1, psi_2)
def callback(inta, intb):
arr_a = numba.carray(inta, (1, ))
arr_b = numba.carray(intb, (1, ))
return arr_a[0] - arr_b[0]
def A_x_F_real(x, data):
xi, xi2, h_nodes, z = numba.carray(data, 4, dtype=numba.float64)
return A_x_F(x, xi, xi2, h_nodes, z).real
def impl():
return numba.carray(
# pylint: disable-next=no-value-for-parameter
_address_as_void_pointer(_MPI_Double_ptr),
shape=(1, ),
dtype=np.intp)[0]
def array_constructor() -> np.ndarray:
"""helper that reconstructs the array from the pointer and structural info"""
data: np.ndarray = nb.carray(address_as_void_pointer(data_addr), shape, dtype)
if strides is not None:
data = np.lib.index_tricks.as_strided(data, shape, strides) # type: ignore
return data
def _crack_tip_integrand(x, data):
alpha, k_p, k_s = numba.carray(data, 3, dtype=numba.float64)
return -math.atan(
(4 * x ** 2 * math.sqrt(x ** 2 - k_p ** 2) * math.sqrt(k_s ** 2 - x ** 2))
/ (2 * x ** 2 - k_s ** 2) ** 2
) / ((x + alpha) * math.pi)
def my_callback(in_, out, m, n):
in_array = carray(in_, (m, n))
out_array = carray(out, (m, n))
for i in range(m):
for j in range(n):
out_array[i, j] = 2 * in_array[i, j]
def wrapped(output_ptr, input_ptr, output_rank, input_rank, user_data):
output_coords = carray(output_ptr, (output_rank,), dtype=intp)
input_coords = carray(input_ptr, (output_rank,), dtype=float64)
jitted_function(output_coords, input_coords)
return 1
def set_all_values_to_float(out_ptr, out_shape_ptr, ndim_out, in_ptr,
in_shape_ptr, ndim_in):
out_shape = carray(out_shape_ptr, ndim_out)
out_arr = carray(out_ptr, (out_shape[0], out_shape[1], out_shape[2]))
out_arr[:] = 0.5
def integrand_cfunc(N, XX):
vals = numba.carray(XX, N)
return jitted(vals)
def change_out_shape(out_ptr, out_shape_ptr, ndim_out, in_ptr, in_shape_ptr,
ndim_in):
out_shape = carray(out_shape_ptr, ndim_out)
out_arr = carray(out_ptr, (out_shape[0], out_shape[1], out_shape[2]))
out_arr[:] = 42
def hello_cfunc(in_ptr, out_ptr, size):
in_arr = carray(in_ptr, size)
out_arr = carray(out_ptr, size)
out_arr[:] = 255
def next_64(st):
bit_gen_state = carray(st, (2, ), dtype=np.uint64)
return splitmix_next(bit_gen_state)
def A_x_F2_imag(x, data):
xi, xi2, h_nodes, z = numba.carray(data, 4, dtype=numba.float64)
return A_x_F2(x, xi, xi2, h_nodes, z).imag
def eval(values, num_points, value_size, x, gdim, t):
np_values = numba.carray(values, (num_points, value_size),
dtype=scalar_type)
np_x = numba.carray(x, (num_points, gdim),
dtype=numba.types.double)
f_jit(np_values, np_x, t)
def wrapped(n, xx):
values = carray(xx,n)
return jitted_function(values)
def wrapped(values_ptr, len_values, result, data):
values = carray(values_ptr, (len_values, ), dtype=float64)
result[0] = jitted_function(values)
return 1
def run_cfunc(out_ptr, out_shapes_ptr, out_ndims_ptr, num_outs,
in_ptr, in_shapes_ptr, in_ndims_ptr, num_ins,
num_samples):
out0 = out1 = out2 = out3 = out4 = out5 = None
out_shapes_np = _get_shape_view(out_shapes_ptr, out_ndims_ptr,
num_outs, num_samples)
out_arr = carray(address_as_void_pointer(out_ptr),
(num_outs, num_samples),
dtype=np.int64)
if num_outs >= 1:
out0 = [
out0_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(out_arr[0], out_shapes_np[0])
]
if num_outs >= 2:
out1 = [
out1_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(out_arr[1], out_shapes_np[1])
]
if num_outs >= 3:
out2 = [
out2_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(out_arr[2], out_shapes_np[2])
]
if num_outs >= 4:
out3 = [
out3_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(out_arr[3], out_shapes_np[3])
]
if num_outs >= 5:
out4 = [
out4_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(out_arr[4], out_shapes_np[4])
]
if num_outs >= 6:
out5 = [
out5_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(out_arr[5], out_shapes_np[5])
]
in0 = in1 = in2 = in3 = in4 = in5 = None
in_shapes_np = _get_shape_view(in_shapes_ptr, in_ndims_ptr,
num_ins, num_samples)
in_arr = carray(address_as_void_pointer(in_ptr),
(num_ins, num_samples),
dtype=np.int64)
if num_ins >= 1:
in0 = [
in0_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(in_arr[0], in_shapes_np[0])
]
if num_ins >= 2:
in1 = [
in1_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(in_arr[1], in_shapes_np[1])
]
if num_ins >= 3:
in2 = [
in2_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(in_arr[2], in_shapes_np[2])
]
if num_ins >= 4:
in3 = [
in3_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(in_arr[3], in_shapes_np[3])
]
if num_ins >= 5:
in4 = [
in4_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(in_arr[4], in_shapes_np[4])
]
if num_ins >= 6:
in5 = [
in5_lambda(address_as_void_pointer(ptr), shape)
for ptr, shape in zip(in_arr[5], in_shapes_np[5])
]
run_fn_lambda(run_fn, out0, out1, out2, out3, out4, out5, in0,
in1, in2, in3, in4, in5)