def testSVGFormatter(self):
t = MockTable(name='pyodps_test_svg', schema=self.schema, _client=self.odps.rest)
expr = CollectionExpr(_source_data=t, _schema=self.schema)
expr1 = expr.groupby('name').agg(id=expr['id'].sum())
expr2 = expr1['name', expr1.id + 3]
engine = MixedEngine(self.odps)
dag = engine.compile(expr2)
nodes = dag.nodes()
self.assertEqual(len(nodes), 1)
expr3 = nodes[0].expr
self.assertIsInstance(expr3, GroupByCollectionExpr)
dot = ExprExecutionGraphFormatter(dag)._to_dot()
self.assertNotIn('Projection', dot)
expr1 = expr.groupby('name').agg(id=expr['id'].sum()).cache()
expr2 = expr1['name', expr1.id + 3]
engine = MixedEngine(self.odps)
dag = engine.compile(expr2)
nodes = dag.nodes()
self.assertEqual(len(nodes), 2)
dot = ExprExecutionGraphFormatter(dag)._to_dot()
self.assertIn('Projection', dot)
class Test(TestBase):
def setup(self):
datatypes = lambda *types: [validate_data_type(t) for t in types]
schema = Schema.from_lists(
['name', 'id', 'fid', 'isMale', 'scale', 'birth'],
datatypes('string', 'bigint', 'double', 'boolean', 'decimal',
'datetime'))
table = MockTable(name='pyodps_test_expr_table', schema=schema)
self.tb = DataFrame(table)
import pandas as pd
df = pd.DataFrame([['name1', 2, 3.14], ['name2', 100, 2.7]],
columns=['name', 'id', 'fid'])
self.pd = DataFrame(df)
self.expr = self.tb.join(self.pd, on='name')
self.engine = MixedEngine(self.odps)
def testMixedCompile(self):
dag = self.engine.compile(self.expr)
self.assertEqual(len(dag._graph), 2)
topos = dag.topological_sort()
root_node, expr_node = topos[0], topos[1]
root = root_node.expr
expr = expr_node.expr
self.assertTrue(expr.is_ancestor(root))
self.assertIn(id(expr_node), dag._graph[id(root_node)])
self.assertEqual(len(available_engines(expr.data_source())), 1)
def testCacheCompile(self):
expr = self.tb['name', 'id'].cache()
expr = expr.groupby('name').agg(expr.id.mean()).cache()
expr = expr.distinct()
dag = self.engine.compile(expr)
self.assertEqual(len(dag._graph), 3)
topos = dag.topological_sort()
project_node, groupby_node, distinct_node = topos[0], topos[1], topos[
2]
distincted = distinct_node.expr
self.assertIn(id(groupby_node), dag._graph[id(project_node)])
self.assertIn(id(distinct_node), dag._graph[id(groupby_node)])
self.assertIsInstance(distincted, DistinctCollectionExpr)
def testDep(self):
expr = self.tb.pivot_table(rows='id', columns='name', values='fid')
dag = self.engine.compile(expr)
self.assertEqual(len(dag._graph), 2)
self.assertEqual(sum(len(v) for v in dag._graph.values()), 1)
class Test(TestBase):
def setup(self):
import pandas as pd
odps_data = [
['name1', 1],
['name2', 2],
['name1', 3],
]
pd_data = [['name1', 5], ['name2', 6]]
names = ['name', 'id']
types = ['string', 'bigint']
table = tn('pyodps_df_mixed_%d' % os.getpid())
if self.odps.exist_table(table):
self.t = self.odps.get_table(table)
else:
self.t = self.odps.create_table(table,
Schema.from_lists(names, types),
lifecycle=1)
with self.t.open_writer() as w:
w.write([self.t.new_record(r) for r in odps_data])
self.odps_df = DataFrame(self.t)
self.pd_df = DataFrame(pd.DataFrame(pd_data, columns=names))
self.engine = MixedEngine(self.odps)
self.pd_engine = PandasEngine(self.odps)
def teardown(self):
self.engine._selecter.force_odps = False
def testGroupReduction(self):
expr = self.odps_df.select(self.odps_df,
id2=self.odps_df.id.map(lambda x: x + 1))
expr = expr.groupby('name').id2.sum()
expected = [['name1', 6], ['name2', 3]]
res = self.engine.execute(expr)
result = self._get_result(res)
self.assertEqual(sorted([[r[1]] for r in expected]), sorted(result))
def assertPandasEqual(self, df1, df2):
from odps.compat import six
from odps import types as o_types
from pandas.util.testing import assert_frame_equal
# compare column types
def get_odps_type(p_type):
for data_type, builtin_type in six.iteritems(
o_types._odps_primitive_to_builtin_types):
if issubclass(p_type.type, builtin_type):
return data_type
types1 = [get_odps_type(dt) for dt in df1.dtypes]
types2 = [get_odps_type(dt) for dt in df2.dtypes]
self.assertSequenceEqual(types1, types2)
assert_frame_equal(df1, df2, check_dtype=False)
def testJoin(self):
expr = self.odps_df.join(self.pd_df, 'name').sort('id_x')
result = self.engine.execute(expr).values
df = DataFrame(self.odps_df.to_pandas())
expected = self.pd_engine.execute(
df.join(self.pd_df, 'name').sort('id_x')).values
self.assertTrue(result.equals(expected))
def testUnion(self):
expr = self.odps_df.union(self.pd_df).sort(['id', 'name'])
result = self.engine.execute(expr).values
df = DataFrame(self.odps_df.to_pandas())
expected = self.pd_engine.execute(
df.union(self.pd_df).sort(['id', 'name'])).values
self.assertTrue(result.equals(expected))
schema = Schema.from_lists(
[c.name for c in self.t.schema.columns if c.name != 'name'],
[c.type for c in self.t.schema.columns if c.name != 'name'],
['name'], ['string'])
t = self.odps.create_table(
'tmp_pyodps_%s' % str(uuid.uuid4()).replace('-', '_'), schema)
try:
expr = self.odps_df.union(self.pd_df)
expr.persist(t.name, create_table=False, partitions=['name'])
self.assertEqual(self.engine.execute(DataFrame(t).count()), 5)
self.engine._selecter.force_odps = False
df = DataFrame(t)
self.assertGreaterEqual(
len(
self.engine.execute(df.filter(df.name > 'a',
df.name < 'b'))), 0)
finally:
t.drop()
def testIsIn(self):
expr = self.odps_df['name'].isin(self.pd_df['name']).rename('isin')
result = self.engine.execute(expr).values
df = DataFrame(self.odps_df.to_pandas())
expected = self.pd_engine.execute(df['name'].isin(
self.pd_df['name']).rename('isin')).values
self.assertTrue(result.equals(expected))
expr = (self.odps_df.id + 2).isin(self.pd_df['id']).rename('isin')
res = self.engine.execute(expr)
result = self._get_result(res)
expected = [[False], [False], [True]]
self.assertEqual(result, expected)
def testMixed(self):
expr = self.odps_df.union(
self.odps_df.join(self.pd_df,
'name')[lambda x: x.name,
lambda x: x.id_x.rename('id')]).sort(
['name', 'id'])
expr = expr[expr['name'].isin(self.pd_df['name'])]
expr = expr[expr, func.rand(rtype='float').rename('rand')]
result = self.engine.execute(expr).values[['name', 'id']]
df = DataFrame(self.odps_df.to_pandas())
test_expr = df.union(
df.join(self.pd_df, 'name')[lambda x: x.name,
lambda x: x.id_x.rename('id')]).sort(
['name', 'id'])
test_expr = test_expr[test_expr['name'].isin(self.pd_df['name'])]
expected = self.pd_engine.execute(test_expr).values
self.assertTrue(result.equals(expected))
def testPandasPersist(self):
import pandas as pd, numpy as np
tmp_table_name = tn('pyodps_test_mixed_persist')
self.odps.delete_table(tmp_table_name, if_exists=True)
t = self.odps.create_table(
tmp_table_name, ('a bigint, b bigint, c bigint', 'ds string'))
t.create_partition('ds=today')
try:
pd_df = pd.DataFrame(np.arange(9).reshape(3, 3),
columns=list('abc'))
df = DataFrame(pd_df).persist(tmp_table_name,
partition='ds=today',
odps=self.odps)
self.assertPandasEqual(df[list('abc')].to_pandas(), pd_df)
finally:
self.odps.delete_table(tmp_table_name)
self.odps.to_global()
tmp_table_name = tn('pyodps_test_mixed_persist2')
self.odps.delete_table(tmp_table_name, if_exists=True)
try:
pd_df = pd.DataFrame(np.arange(9).reshape(3, 3),
columns=list('abc'))
df = DataFrame(pd_df).persist(tmp_table_name)
self.assertPandasEqual(df.to_pandas(), pd_df)
finally:
self.odps.delete_table(tmp_table_name)
def testExecuteCacheTable(self):
df = self.odps_df[self.odps_df.name == 'name1']
result = df.execute().values
self.assertEqual(len(result), 2)
self.assertTrue(context.is_cached(df))
dag = self.engine.compile(df)
calls = dag.topological_sort()
self.assertEqual(len(calls), 1)
self.assertTrue(is_source_collection(calls[0].expr))
df2 = df[:5]
result = df2.execute()
self.assertEqual(len(result), 2)
def testHandleCache(self):
df = self.pd_df['name', self.pd_df.id + 1]
df.execute()
self.assertTrue(context.is_cached(df))
df2 = df[df.id < 10]
dag = self.engine.compile(df2)
self.assertEqual(len(dag.nodes()), 1)
self.assertTrue(is_source_collection(dag.nodes()[0].expr.input))
df3 = self.pd_df[self.pd_df.id < 10].count()
i = df3.execute()
self.assertTrue(context.is_cached(df3))
df4 = df3 + 1
dag = self.engine.compile(df4)
self.assertEqual(len(dag.nodes()), 1)
self.assertIsNotNone(dag.nodes()[0].expr._fields[0].lhs.value)
self.assertEqual(df4.execute(), i + 1)
def testCacheTable(self):
self.engine._selecter.force_odps = True
df = self.odps_df.join(self.pd_df, 'name').cache()
df2 = df.sort('id_x')
dag = self.engine.compile(df2)
self.assertEqual(len(dag.nodes()), 3)
result = self.engine.execute(df2).values
df3 = DataFrame(self.odps_df.to_pandas())
expected = self.pd_engine.execute(
df3.join(self.pd_df, 'name').sort('id_x')).values
self.assertTrue(result.equals(expected))
self.assertEqual(len(self.engine._generated_table_names), 2)
table = context.get_cached(df)
self.assertEqual(len(self.engine.execute(df)), len(expected))
self.assertIs(context.get_cached(df), table)
if not isinstance(table, SeahawksTable):
self.assertEqual(context.get_cached(df).lifecycle, 1)
df4 = df[df.id_x < 3].count()
result = self.engine.execute(df4)
self.assertEqual(result, 2)
self.assertEqual(context.get_cached(df4), 2)
def testUseCache(self):
self.engine._selecter.force_odps = True
df_cache = self.odps_df[self.odps_df['name'] == 'name1'].cache()
df = df_cache[df_cache.id * 2, df_cache.exclude('id')]
self.assertEqual(len(self.engine.execute(df, head=10)), 2)
context.get_cached(df_cache).drop()
self.assertEqual(
len(self.engine.execute(df_cache['name', df_cache.id * 2],
head=10)), 2)
self.assertTrue(context.is_cached(df_cache))
self.assertTrue(
self.odps.exist_table(context.get_cached(df_cache).name))
def testHeadAndTail(self):
res = self.odps_df.head(2)
self.assertEqual(len(res), 2)
df = self.odps_df[self.odps_df['name'] == 'name1']
res = df.head(1)
self.assertEqual(len(res), 1)
self.assertTrue(context.is_cached(df))
res = self.odps_df.tail(2)
self.assertEqual(len(res), 2)
self.assertTrue(all(it > 1 for it in res.values['id']))
self.assertEqual(len(self.odps_df.name.head(2)), 2)
self.assertEqual(len(self.odps_df.name.tail(2)), 2)
res = self.pd_df.head(1)
self.assertEqual(len(res), 1)
df = self.pd_df[self.pd_df['name'] == 'name1']
res = df.head(1)
self.assertEqual(len(res), 1)
self.assertTrue(context.is_cached(df))
res = self.pd_df.tail(1)
self.assertEqual(len(res), 1)
self.assertEqual(res.values['id'][0], 6)
self.assertEqual(len(self.pd_df.name.head(1)), 1)
self.assertEqual(len(self.pd_df.name.tail(1)), 1)
class TunnelOnlyODPSEngine(ODPSSQLEngine):
def _do_execute(self, *args, **kwargs):
kwargs['_force_tunnel'] = True
return super(TunnelOnlyODPSEngine,
self)._do_execute(*args, **kwargs)
engine = MixedEngine(self.odps)
engine._odpssql_engine = TunnelOnlyODPSEngine(self.odps)
res = engine.execute(self.odps_df['id'], head=3)
self.assertIsNotNone(res)
self.assertEqual(sum(res.values['id']), 6)
table_name = tn('pyodps_df_mixed2')
self.odps.delete_table(table_name, if_exists=True)
table = next(self.odps_df.data_source())
table2 = self.odps.create_table(table_name, table.schema)
try:
res = DataFrame(table2).head(10)
self.assertEqual(len(res), 0)
finally:
table2.drop()
def testMapReduceWithResource(self):
pd_df2 = self.odps_df.to_pandas(wrap=True)
@output(['name', 'id'], ['string', 'int'])
def reducer(resources):
d = dict()
for r in resources[0]:
if r.name in d:
d[r.name] += r.id
else:
d[r.name] = r.id
def inner(keys):
def h(row, done):
if row.name in d:
d[row.name] += row.id
else:
d[row.name] = row.id
if done:
yield row.name, d[row.name]
return h
return inner
expr = pd_df2.map_reduce(reducer=reducer,
reducer_resources=[self.pd_df],
group='name')
result = expr.execute()
self.assertEqual(result.values['id'].sum(), 17)
odps_df2 = self.pd_df.persist(tn('pyodps_df_mixed2'), odps=self.odps)
try:
expr = self.odps_df.map_reduce(reducer=reducer,
reducer_resources=[odps_df2],
group='name')
result = expr.execute()
self.assertEqual(result.values['id'].sum(), 17)
expr = self.odps_df.map_reduce(reducer=reducer,
reducer_resources=[self.pd_df],
group='name')
result = expr.execute()
self.assertEqual(result.values['id'].sum(), 17)
expr = pd_df2.map_reduce(reducer=reducer,
reducer_resources=[odps_df2],
group='name')
result = expr.execute()
self.assertEqual(result.values['id'].sum(), 17)
finally:
next(odps_df2.data_source()).drop()
def testBloomFilter(self):
import numpy as np
data2 = [['name1'], ['name3']]
table_name = tn('pyodps_test_mixed_engine_bf_table2')
self.odps.delete_table(table_name, if_exists=True)
table2 = self.odps.create_table(name=table_name,
schema=Schema.from_lists(['name'],
['string']))
expr2 = DataFrame(table2)
self.odps.write_table(table2, 0, data2)
try:
expr = self.odps_df.bloom_filter('name',
expr2[:1].name,
capacity=10)
res = self.engine.execute(expr)
self.assertTrue(np.all(res['name'] != 'name2'))
finally:
table2.drop()
def testCachePersist(self):
expr = self.odps_df
data2 = [['name1', 3.2], ['name3', 2.4]]
table_name = tn('pyodps_test_mixed_engine_cp_table2')
self.odps.delete_table(table_name, if_exists=True)
table2 = self.odps.create_table(
name=table_name,
schema=Schema.from_lists(['name', 'fid'], ['string', 'double']))
expr2 = DataFrame(table2)
self.odps.write_table(table2, 0, data2)
@output(expr.schema.names, expr.schema.types)
def h(row):
yield row
l = expr.filter(expr.id > 0).apply(h, axis=1).cache()
r = expr2.filter(expr2.fid > 0)
joined = l.join(r, on=['name', r.fid < 4])['id', 'fid'].cache()
output_table = tn('pyodps_test_mixed_engine_cp_output_table')
self.odps.delete_table(output_table, if_exists=True)
schema = Schema.from_lists(['id', 'fid'], ['bigint', 'double'], ['ds'],
['string'])
output_t = self.odps.create_table(output_table,
schema,
if_not_exists=True)
t = joined.persist(output_table,
partition='ds=today',
create_partition=True)
self.assertEqual(len(t.execute()), 2)
# test seahawks fallback
self.assertEqual(t.input.count().execute(), 2)
output_t.drop()
def testBigintPartitionedCache(self):
table = tn('pyodps_test_bigint_partitioned_cache')
self.odps.delete_table(table, if_exists=True)
expr = self.odps_df.persist(table, partitions=['id'])
@output(['id', 'name'], ['int', 'string'])
def handle(row):
return row.id + 1, row.name
expr = expr['tt' + expr.name, expr.id].cache()
new_expr = expr.map_reduce(mapper=handle)
res = self.engine.execute(new_expr)
self.assertEqual(len(res), 3)
def testAsync(self):
expr = self.odps_df[self.odps_df.name == 'name1']
future = self.engine.execute(expr, async_=True)
self.assertFalse(future.done())
res = future.result()
self.assertEqual(len(res), 2)
def testBatch(self):
odps_expr = self.odps_df[self.odps_df.id < 4].cache()
expr = odps_expr.join(self.pd_df, 'name').sort('id_x')
dag = self.engine.compile(expr)
self.assertEqual(len(dag.nodes()), 3)
f = self.engine.execute(expr, async_=True, n_parallel=2)
result = f.result().values
df = DataFrame(self.odps_df.to_pandas())
expected = self.pd_engine.execute(
df.join(self.pd_df, 'name').sort('id_x')).values
self.assertTrue(result.equals(expected))
def testBatchStop(self):
self.engine._selecter.force_odps = True
expr1 = self.odps_df[self.odps_df.id < 3].cache()
expr2 = self.odps_df[self.odps_df.id > 3].cache()
expr3 = expr1.union(expr2)
self.engine.execute([expr1, expr2, expr3], n_parallel=2, async_=True)
time.sleep(2)
instance_ids = self.engine._odpssql_engine._instances
self.assertEqual(len(instance_ids), 2)
self.engine.stop()
instances = [self.odps.get_instance(i) for i in instance_ids]
[i.wait_for_completion() for i in instances]
self.assertEqual(
list(instances[0].get_task_statuses().values())[0].status,
Instance.Task.TaskStatus.CANCELLED)
self.assertEqual(
list(instances[1].get_task_statuses().values())[0].status,
Instance.Task.TaskStatus.CANCELLED)
def testFailure(self):
from odps.df.backends.errors import DagDependencyError
expr1 = self.odps_df[self.odps_df.id / 0 < 0].cache()
expr2 = expr1.count()
fs = self.engine.execute(expr2, async_=True)
self.assertRaises(DagDependencyError, fs.result)
def testAppendIDCache(self):
options.ml.dry_run = False
@output(['id1'] + self.odps_df.schema.names,
['int'] + self.odps_df.schema.types)
def h(row):
yield row
expr1 = self.odps_df.append_id(id_col='id1').apply(h, axis=1)
expr2 = self.odps_df.append_id(id_col='id2')
expr3 = expr1.join(expr2, on='id')['id1', 'id2']
self.assertEqual(len(expr3.execute()), 3)
def testAppendId(self):
options.ml.dry_run = False
expr = self.odps_df['name', ].distinct()
expr = expr.append_id(id_col='id2')
expr = expr.join(self.odps_df, on=['name'])
tablename = tn('pyodps_test_append_id_persist')
self.odps.delete_table(tablename, if_exists=True)
expr.persist(tablename, partitions=['name'], lifecycle=1)
def testHorzConcat(self):
options.ml.dry_run = False
table_name = tn('test_horz_concat_table2_xxx_yyy')
self.odps.delete_table(table_name, if_exists=True)
result_table_name = tn('test_horz_concat_result')
self.odps.delete_table(result_table_name, if_exists=True)
self.odps_df[self.odps_df.name,
(self.odps_df.id *
2).rename('ren_id')].persist(table_name)
df2 = self.odps.get_table(table_name).to_df()
df2 = df2[:3]
expr = self.odps_df.concat(df2.ren_id, axis=1)
expr.persist(result_table_name, lifecycle=1)
def testAsTypeMapReduce(self):
expr = self.odps_df[self.odps_df.exclude('id'),
self.odps_df.id.astype('float')]
expr = expr.filter(expr.id < 10)['id', 'name']
@output(['id', 'name'], ['float', 'string'])
def h(group):
def inn(row, done):
yield row
return inn
expr = expr.map_reduce(reducer=h)
expr.execute()
expr = self.odps_df[self.odps_df.exclude('id'),
self.odps_df.id.astype('float')]
expr = expr.filter(expr.id < 10).distinct('id', 'name')
@output(['id', 'name'], ['float', 'string'])
def h(group):
def inn(row, done):
yield row
return inn
expr = expr.map_reduce(reducer=h)
expr.execute()