def setUp(self):
AbstractPlateAnalysisCtx.DEFAULT_ORIGINAL_FILE_PROVIDER = \
FromFileOriginalFileProvider
original_files = list()
# Create our container images and an original file image map
images = list()
n_images = 0
for row in range(16):
for column in range(24):
well = WellI(n_images, True)
well.column = rint(column)
well.row = rint(row)
well_sample = WellSampleI(n_images, True)
well_sample.well = well
image = ImageI(n_images, True)
image.addWellSample(well_sample)
images.append(image)
original_file_image_map = dict()
# Our required original file format
format = rstring('Companion/InCell')
# Create original file representing the result file
o = OriginalFileI(1, True)
o.name = rstring(self.RESULT_FILE)
o.path = rstring(os.path.join(self.ROOT, self.RESULT_FILE))
o.mimetype = format
original_files.append(o) # [1] = o
original_file_image_map[1] = image
sf = TestingServiceFactory()
self.analysis_ctx = InCellPlateAnalysisCtx(images, original_files,
original_file_image_map, 1,
sf)
def setUp(self):
AbstractPlateAnalysisCtx.DEFAULT_ORIGINAL_FILE_PROVIDER = \
FromFileOriginalFileProvider
original_files = list()
# Create our container images and an original file image map
images = list()
n_images = 0
for row in range(16):
for column in range(24):
well = WellI(n_images, True)
well.column = rint(column)
well.row = rint(row)
well_sample = WellSampleI(n_images, True)
well_sample.well = well
image = ImageI(n_images, True)
image.addWellSample(well_sample)
images.append(image)
original_file_image_map = dict()
# Our required original file format
format = rstring('Companion/InCell')
# Create original file representing the result file
o = OriginalFileI(1L, True)
o.name = rstring(self.RESULT_FILE)
o.path = rstring(os.path.join(self.ROOT, self.RESULT_FILE))
o.mimetype = format
original_files.append(o) #[1L] = o
original_file_image_map[1L] = image
sf = TestingServiceFactory()
self.analysis_ctx = InCellPlateAnalysisCtx(
images, original_files, original_file_image_map, 1L, sf)
