Python GoRule17示例

示例#1

def test_go_rule_17():
    # IDA with anything in withfrom
    assoc = make_annotation(evidence="IDA", withfrom="BLAH:12345").associations[0]

    test_result = qc.GoRule17().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.WARNING

    # Nothing in withfrom, passes
    assoc.evidence.with_support_from = []
    test_result = qc.GoRule17().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS

示例#2

文件： test_qc.py 项目： geneontology/ontobio

def test_go_rule_17():
    # IDA with anything in withfrom
    a = ["blah"] * 16
    a[6] = "IDA"
    a[7] = "BLAH:12345"

    test_result = qc.GoRule17().test(a, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.WARNING

    # Nothing in withfrom, passes
    a[7] = ""
    test_result = qc.GoRule17().test(a, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS

示例#3

文件： test_qc.py 项目： robertdigital/ontobio

def test_go_rule_17():
    # IDA with anything in withfrom
    a = ["blah"] * 15
    a[3] = ""
    a[6] = "IDA"
    a[7] = "BLAH:12345"
    a[8] = "P"
    assoc = gafparser.to_association(a).associations[0]

    test_result = qc.GoRule17().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.WARNING

    # Nothing in withfrom, passes
    assoc.evidence.with_support_from = []
    test_result = qc.GoRule17().test(assoc, assocparser.AssocParserConfig())
    assert test_result.result_type == qc.ResultType.PASS