def test_gorule43():
a = ["blah"] * 15
a[3] = ""
a[5] = "GO_REF:0000024"
a[6] = "ISO"
a[8] = "P"
assoc = gafparser.to_association(a).associations[0]
config = assocparser.AssocParserConfig(
goref_metadata={
"goref-0000024": {
"authors":
"Pascale Gaudet, Michael Livstone, Paul Thomas, The Reference Genome Project",
"id": "GO_REF:0000024",
"evidence_codes": ["ECO:0000266"]
}
})
test_result = qc.GoRule43().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = "ECO:0000501"
test_result = qc.GoRule43().test(assoc, config)
assert test_result.result_type == qc.ResultType.WARNING
assoc.evidence.type = "ECO:0000266"
assoc.evidence.has_supporting_reference = "FOO:123"
test_result = qc.GoRule43().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
def test_gorule43():
assoc = make_annotation(references="GO_REF:0000024",
evidence="ISO").associations[0]
config = assocparser.AssocParserConfig(goref_metadata={
"goref-0000024": {
"authors":
"Pascale Gaudet, Michael Livstone, Paul Thomas, The Reference Genome Project",
"id": "GO_REF:0000024",
"evidence_codes": ["ECO:0000266"]
}
},
rule_set=assocparser.RuleSet.ALL)
test_result = qc.GoRule43().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.type = Curie.from_str("ECO:0000501")
test_result = qc.GoRule43().test(assoc, config)
assert test_result.result_type == qc.ResultType.WARNING
assoc.evidence.type = Curie.from_str("ECO:0000266")
assoc.evidence.has_supporting_reference = [Curie.from_str("FOO:123")]
test_result = qc.GoRule43().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
def test_gorule43():
a = ["blah"] * 16
a[5] = "GO_REF:0000024"
a[6] = "ISO"
config = assocparser.AssocParserConfig(
goref_metadata={
"goref-0000024": {
"authors":
"Pascale Gaudet, Michael Livstone, Paul Thomas, The Reference Genome Project",
"id": "GO_REF:0000024",
"evidence_codes": ["ECO:0000266"]
}
})
test_result = qc.GoRule43().test(a, config)
assert test_result.result_type == qc.ResultType.PASS
a[6] = "FOO"
test_result = qc.GoRule43().test(a, config)
assert test_result.result_type == qc.ResultType.WARNING
a[6] = "ISO"
a[5] = "FOO:123"
test_result = qc.GoRule43().test(a, config)
assert test_result.result_type == qc.ResultType.PASS