# create range
fill = [COPIES_EACH + 1] * NUM_ITEMS
ranges = array('i', fill)
numTrials = 1
maxIters = 5000
outfile = './../logs/KS_@ALG@_@N@_LOG.csv'
ef = KnapsackEvaluationFunction(weights, volumes, KNAPSACK_VOLUME, copies)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = UniformCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
#MIMIC
for t in range(numTrials):
for samples,keep,m in product([100],[50],[0.1,0.3,0.5,0.7,0.9]):
fname = outfile.replace('@ALG@','MIMIC{}_{}_{}'.format(samples,keep,m)).replace('@N@',str(t+1))
with open(fname,'w') as f:
f.write('iterations,fitness,time\n')
df = DiscreteDependencyTree(m, ranges)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
mimic = MIMIC(samples, keep, pop)
fit = FixedIterationTrainer(mimic, 10)
times =[0]
for i in range(0,maxIters,10):
start = clock()
fit.train()
def run_four_peaks_experiments():
OUTPUT_DIRECTORY = './output'
if not os.path.exists(OUTPUT_DIRECTORY):
os.makedirs(OUTPUT_DIRECTORY)
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
max_iter = 5000
outfile = OUTPUT_DIRECTORY + '/four_peaks_{}_log.csv'
# Randomized Hill Climber
filename = outfile.format('rhc')
with open(filename, 'w') as f:
f.write('iterations,fitness,time\n')
for it in range(0, max_iter, 10):
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(rhc.getOptimal())
data = '{},{},{}\n'.format(it, score, elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# Simulated Annealing
filename = outfile.format('sa')
with open(filename, 'w') as f:
f.write('iteration,cooling_value,fitness,elapsed_time\n')
for cooling_value in (.19, .38, .76, .95):
for it in range(0, max_iter, 10):
sa = SimulatedAnnealing(1E11, cooling_value, hcp)
fit = FixedIterationTrainer(sa, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevalss
score = ef.value(sa.getOptimal())
data = '{},{},{},{}\n'.format(it, cooling_value, score,
elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# Genetic Algorithm
filename = outfile.format('ga')
with open(filename, 'w') as f:
f.write('iteration,population_size,to_mate,to_mutate,fitness,time\n')
for population_size, to_mate, to_mutate in itertools.product(
[200], [25, 50, 75, 100], [10, 20, 30, 40]):
for it in range(0, max_iter, 10):
ga = StandardGeneticAlgorithm(population_size, to_mate, to_mutate,
gap)
fit = FixedIterationTrainer(ga, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(ga.getOptimal())
data = '{},{},{},{},{},{}\n'.format(it, population_size, to_mate,
to_mutate, score, elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# MIMIC
filename = outfile.format('mm')
with open(filename, 'w') as f:
f.write('iterations,samples,to_keep,fitness,time\n')
for samples, to_keep, m in itertools.product([200], [20],
[0.1, 0.3, 0.5, 0.7, 0.9]):
for it in range(0, 500, 10):
df = DiscreteDependencyTree(m, ranges)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
mm = MIMIC(samples, 20, pop)
fit = FixedIterationTrainer(mm, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(mm.getOptimal())
data = '{},{},{},{},{},{}\n'.format(it, samples, to_keep, m, score,
elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
def travelingsalesmanfunc(N, iterations):
rhcMult = 1500
saMult = 1500
gaMult = 1
mimicMult = 3
random = Random()
points = [[0 for x in xrange(2)] for x in xrange(N)]
for i in range(0, len(points)):
points[i][0] = random.nextDouble()
points[i][1] = random.nextDouble()
optimalOut = []
timeOut = []
evalsOut = []
for niter in iterations:
ef = TravelingSalesmanRouteEvaluationFunction(points)
odd = DiscretePermutationDistribution(N)
nf = SwapNeighbor()
mf = SwapMutation()
cf = TravelingSalesmanCrossOver(ef)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
iterOptimalOut = [N, niter]
iterTimeOut = [N, niter]
iterEvals = [N, niter]
start = time.time()
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, niter * rhcMult)
fit.train()
end = time.time()
rhcOptimal = ef.value(rhc.getOptimal())
rhcTime = end - start
print "RHC Inverse of Distance: optimum: " + str(rhcOptimal)
print "RHC time: " + str(rhcTime)
#print "RHC Inverse of Distance: " + str(ef.value(rhc.getOptimal()))
print "Route:"
path = []
for x in range(0, N):
path.append(rhc.getOptimal().getDiscrete(x))
print path
iterOptimalOut.append(rhcOptimal)
iterTimeOut.append(rhcTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
sa = SimulatedAnnealing(1E12, .999, hcp)
fit = FixedIterationTrainer(sa, niter * saMult)
fit.train()
end = time.time()
saOptimal = ef.value(sa.getOptimal())
saTime = end - start
print "SA Inverse of Distance optimum: " + str(saOptimal)
print "SA time: " + str(saTime)
#print "SA Inverse of Distance: " + str(ef.value(sa.getOptimal()))
print "Route:"
path = []
for x in range(0, N):
path.append(sa.getOptimal().getDiscrete(x))
print path
iterOptimalOut.append(saOptimal)
iterTimeOut.append(saTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
ga = StandardGeneticAlgorithm(2000, 1500, 250, gap)
fit = FixedIterationTrainer(ga, niter * gaMult)
fit.train()
end = time.time()
gaOptimal = ef.value(ga.getOptimal())
gaTime = end - start
print "GA Inverse of Distance optimum: " + str(gaOptimal)
print "GA time: " + str(gaTime)
#print "GA Inverse of Distance: " + str(ef.value(ga.getOptimal()))
print "Route:"
path = []
for x in range(0, N):
path.append(ga.getOptimal().getDiscrete(x))
print path
iterOptimalOut.append(gaOptimal)
iterTimeOut.append(gaTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
# for mimic we use a sort encoding
ef = TravelingSalesmanSortEvaluationFunction(points)
fill = [N] * N
ranges = array('i', fill)
odd = DiscreteUniformDistribution(ranges)
df = DiscreteDependencyTree(.1, ranges)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
start = time.time()
mimic = MIMIC(500, 100, pop)
fit = FixedIterationTrainer(mimic, niter * mimicMult)
fit.train()
end = time.time()
mimicOptimal = ef.value(mimic.getOptimal())
mimicTime = end - start
print "MIMIC Inverse of Distance optimum: " + str(mimicOptimal)
print "MIMIC time: " + str(mimicTime)
#print "MIMIC Inverse of Distance: " + str(ef.value(mimic.getOptimal()))
print "Route:"
path = []
optimal = mimic.getOptimal()
fill = [0] * optimal.size()
ddata = array('d', fill)
for i in range(0, len(ddata)):
ddata[i] = optimal.getContinuous(i)
order = ABAGAILArrays.indices(optimal.size())
ABAGAILArrays.quicksort(ddata, order)
print order
iterOptimalOut.append(mimicOptimal)
iterTimeOut.append(mimicTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
optimalOut.append(iterOptimalOut)
timeOut.append(iterTimeOut)
evalsOut.append(iterEvals)
return [optimalOut, timeOut, evalsOut]
def run_all_2(N=200,T=40,fout=None):
problem = 'flipflop'
# N=200
# T=N/10
maxEpochs = 10**5
maxTime = 300 #5 minutes
fill = [2] * N
ranges = array('i', fill)
# ef = FourPeaksEvaluationFunction(T)
ef = FlipFlopEvaluationFunction()
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
# mf = SwapMutation()
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
def run_algo(alg,fit,label,difficulty,iters):
trainTimes = [0.]
trainTime = []
scoreChange = [0.]
stuckCount = 10**3
prev = 0.
for epoch in range(0,maxEpochs,1):
st = time.clock()
fit.train()
et = time.clock()
trainTimes.append(trainTimes[-1]+(et-st))
trainTime.append((et-st))
rollingMean = 10
avgTime = (math.fsum(trainTime[-rollingMean:]) / float(rollingMean))
score = ef.value(alg.getOptimal())
# print(score,difficulty)
# trialString = '{}-{}-{}-{}'.format(label,score,epoch,trainTimes[-1])
trialData = [problem,difficulty,label,score,epoch,trainTimes[-1],avgTime,iters]
print(trialData)
# fout.writerow(trialData)
optimum = (difficulty-1)
if score >= optimum: break
scoreChange.append(abs(score-prev))
prev = score
scoreChange = scoreChange[-stuckCount:]
# print(scoreChange)
if max(scoreChange) == 0: break
if trainTimes[-1] > maxTime: break
# print(trialData)
fout.writerow(trialData)
iters = 10
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, iters)
run_algo(rhc,fit,'RHC',N,iters)
iters = 10
startTemp = 1E10
coolingFactor = .99
sa = SimulatedAnnealing(startTemp, coolingFactor, hcp)
fit = FixedIterationTrainer(sa, iters)
run_algo(sa,fit,'SA',N,iters)
iters = 10
population = 300
mates = 40
mutations = 10
ga = StandardGeneticAlgorithm(population, mates, mutations, gap)
fit = FixedIterationTrainer(ga, iters)
run_algo(ga,fit,'GA',N,iters)
iters = 10
samples = 200
keep = 5
mimic = MIMIC(samples, keep, pop)
fit = FixedIterationTrainer(mimic, iters)
run_algo(mimic,fit,'MIMIC',N,iters)
def run_four_peaks():
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
iters = [50, 100, 250, 500, 1000, 2500, 5000, 10000, 25000, 50000, 100000]
num_repeats = 5
rhc_results = []
rhc_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, i)
fit.train()
end = time.time()
rhc_results.append(ef.value(rhc.getOptimal()))
rhc_times.append(end - start)
print "RHC: " + str(ef.value(rhc.getOptimal()))
sa_results = []
sa_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
sa = SimulatedAnnealing(1E11, .95, hcp)
fit = FixedIterationTrainer(sa, i)
fit.train()
end = time.time()
sa_results.append(ef.value(sa.getOptimal()))
sa_times.append(end - start)
print "SA: " + str(ef.value(sa.getOptimal()))
ga_results = []
ga_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
ga = StandardGeneticAlgorithm(200, 100, 10, gap)
fit = FixedIterationTrainer(ga, i)
fit.train()
end = time.time()
ga_results.append(ef.value(ga.getOptimal()))
ga_times.append(end - start)
print "GA: " + str(ef.value(ga.getOptimal()))
mimic_results = []
mimic_times = []
for i in iters[0:6]:
print(i)
for j in range(num_repeats):
start = time.time()
mimic = MIMIC(200, 20, pop)
fit = FixedIterationTrainer(mimic, i)
fit.train()
end = time.time()
mimic_results.append(ef.value(mimic.getOptimal()))
mimic_times.append(end - start)
print "MIMIC: " + str(ef.value(mimic.getOptimal()))
with open('four_peaks.csv', 'w') as csvfile:
writer = csv.writer(csvfile)
writer.writerow(rhc_results)
writer.writerow(rhc_times)
writer.writerow(sa_results)
writer.writerow(sa_times)
writer.writerow(ga_results)
writer.writerow(ga_times)
writer.writerow(mimic_results)
writer.writerow(mimic_times)
return rhc_results, rhc_times, sa_results, sa_times, ga_results, ga_times, mimic_results, mimic_times
def run_knapsack_experiments():
OUTPUT_DIRECTORY = './output'
# Random number generator */
random = Random()
# The number of items
NUM_ITEMS = 40
# The number of copies each
COPIES_EACH = 4
# The maximum weight for a single element
MAX_WEIGHT = 50
# The maximum volume for a single element
MAX_VOLUME = 50
# The volume of the knapsack
KNAPSACK_VOLUME = MAX_VOLUME * NUM_ITEMS * COPIES_EACH * .4
# create copies
fill = [COPIES_EACH] * NUM_ITEMS
copies = array('i', fill)
# create weights and volumes
fill = [0] * NUM_ITEMS
weights = array('d', fill)
volumes = array('d', fill)
for i in range(0, NUM_ITEMS):
weights[i] = random.nextDouble() * MAX_WEIGHT
volumes[i] = random.nextDouble() * MAX_VOLUME
# create range
fill = [COPIES_EACH + 1] * NUM_ITEMS
ranges = array('i', fill)
ef = KnapsackEvaluationFunction(weights, volumes, KNAPSACK_VOLUME, copies)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = UniformCrossOver()
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
max_iter = 5000
outfile = OUTPUT_DIRECTORY + '/knapsack_{}_log.csv'
# Randomized Hill Climber
filename = outfile.format('rhc')
with open(filename, 'w') as f:
f.write('iterations,fitness,time\n')
for it in range(0, max_iter, 10):
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(rhc.getOptimal())
data = '{},{},{}\n'.format(it, score, elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# Simulated Annealing
filename = outfile.format('sa')
with open(filename, 'w') as f:
f.write('iteration,cooling_value,fitness,time\n')
for cooling_value in (.19, .38, .76, .95):
for it in range(0, max_iter, 10):
sa = SimulatedAnnealing(200, cooling_value, hcp)
fit = FixedIterationTrainer(sa, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(sa.getOptimal())
data = '{},{},{},{}\n'.format(it, cooling_value, score,
elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# Genetic Algorithm
filename = outfile.format('ga')
with open(filename, 'w') as f:
f.write('iteration,population_size,to_mate,to_mutate,fitness,time\n')
for population_size, to_mate, to_mutate in itertools.product(
[200], [110, 120, 130, 140, 150], [2, 4, 6, 8]):
for it in range(0, max_iter, 10):
ga = StandardGeneticAlgorithm(population_size, to_mate, to_mutate,
gap)
fit = FixedIterationTrainer(ga, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(ga.getOptimal())
data = '{},{},{},{},{},{}\n'.format(it, population_size, to_mate,
to_mutate, score, elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# MIMIC
filename = outfile.format('mm')
with open(filename, 'w') as f:
f.write('iterations,samples,to_keep,m,fitness,time\n')
for samples, to_keep, m in itertools.product([200], [100],
[0.1, 0.3, 0.5, 0.7, 0.9]):
for it in range(0, 500, 10):
df = DiscreteDependencyTree(m, ranges)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
mm = MIMIC(samples, 20, pop)
fit = FixedIterationTrainer(mm, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(mm.getOptimal())
data = '{},{},{},{},{},{}\n'.format(it, samples, to_keep, m, score,
elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
initial_distribution = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mutation_function = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hill_climbing_problem = GenericHillClimbingProblem(ef, initial_distribution,
nf)
genetic_problem = GenericGeneticAlgorithmProblem(ef, initial_distribution,
mutation_function, cf)
probablistic_optimization = GenericProbabilisticOptimizationProblem(
ef, initial_distribution, df)
from time import time
f = open("experiments/results/fourpeaks_optimal_1000.txt", "w")
f.write("starting RHC\n")
rhc = RandomizedHillClimbing(hill_climbing_problem)
score = 0
iters = 0
t0 = time()
while iters < 60000:
score = rhc.train()
f.write(str(iters) + "," + str(score) + "\n")
iters += 1
def run_algorithm_test(ranges, algorithms, output_file_name, trial_number, iterations=False):
with open(output_file_name,'w') as f:
f.write('algorithm,optimal_result,iterations,time,trial\n')
ef = CountOnesEvaluationFunction()
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
for trial in range(trial_number):
if iterations is False:
for item in algorithms:
start_time = time.time()
if item in ['rhc']:
optimal_result, run_iters = run_rhc(hcp, ef)
elif item in ['sa']:
optimal_result, run_iters = run_sa(hcp, ef)
elif item in ['ga']:
optimal_result, run_iters = run_ga(gap, ef)
elif item in ['mimic']:
optimal_result, run_iters = run_mimic(pop, ef)
else:
print "The algorithm type {} is not supported.".format(item)
end_time = time.time()
time_elapsed = end_time - start_time
run_output = '{},{},{},{},{}\n'.format(item, optimal_result, run_iters, time_elapsed, trial)
with open(output_file_name,'a') as f:
f.write(run_output)
else:
for iter in iterations:
for item in algorithms:
start_time = time.time()
if item in ['rhc']:
optimal_result, run_iters = run_rhc(hcp, ef, iter)
elif item in ['sa']:
optimal_result, run_iters = run_sa(hcp, ef, iter)
elif item in ['ga']:
optimal_result, run_iters = run_ga(gap, ef, iter)
elif item in ['mimic']:
optimal_result, run_iters = run_mimic(pop, ef, iter)
else:
print "The algorithm type {} is not supported.".format(item)
end_time = time.time()
time_elapsed = end_time - start_time
run_output = '{},{},{},{},{}\n'.format(item, optimal_result, run_iters, time_elapsed, trial)
with open(output_file_name,'a') as f:
f.write(run_output)
print "time elapsed is {}".format(time_elapsed)
return
ef = TravelingSalesmanRouteEvaluationFunction(points)
odd = DiscretePermutationDistribution(N)
nf = SwapNeighbor()
mf = SwapMutation()
cf = TravelingSalesmanCrossOver(ef)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
# # for mimic we use a sort encoding
efm = TravelingSalesmanSortEvaluationFunction(points)
fill = [N] * N
ranges = array('i', fill)
oddm = DiscreteUniformDistribution(ranges)
dfm = DiscreteDependencyTree(.1, ranges);
pop = GenericProbabilisticOptimizationProblem(efm, oddm, dfm)
def merge_two_dicts(x, y):
z = x.copy() # start with x's keys and values
z.update(y) # modifies z with y's keys and values & returns None
return z
def rhc_fac(args = {}):
constant_params = {'hcp':hcp}
params = merge_two_dicts(args, constant_params)
print(params)
rhc = RandomizedHillClimbing(hcp)
return FixedIterationTrainer(rhc, num_iterations)
def sa_fac(args = {}):
constant_params = {'hcp':hcp}
def knapsackfunc(NUM_ITEMS, iterations):
rhcMult = 600
saMult = 600
gaMult = 4
mimicMult = 3
# Random number generator */
random = Random()
# The number of items
#NUM_ITEMS = 40
# The number of copies each
COPIES_EACH = 4
# The maximum weight for a single element
MAX_WEIGHT = 50
# The maximum volume for a single element
MAX_VOLUME = 50
# The volume of the knapsack
KNAPSACK_VOLUME = MAX_VOLUME * NUM_ITEMS * COPIES_EACH * .4
# create copies
fill = [COPIES_EACH] * NUM_ITEMS
copies = array('i', fill)
# create weights and volumes
fill = [0] * NUM_ITEMS
weights = array('d', fill)
volumes = array('d', fill)
for i in range(0, NUM_ITEMS):
weights[i] = random.nextDouble() * MAX_WEIGHT
volumes[i] = random.nextDouble() * MAX_VOLUME
# create range
fill = [COPIES_EACH + 1] * NUM_ITEMS
ranges = array('i', fill)
ef = KnapsackEvaluationFunction(weights, volumes, KNAPSACK_VOLUME, copies)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = UniformCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
optimalOut = []
timeOut = []
evalsOut = []
for niter in iterations:
iterOptimalOut = [NUM_ITEMS, niter]
iterTimeOut = [NUM_ITEMS, niter]
iterEvals = [NUM_ITEMS, niter]
start = time.time()
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, niter*rhcMult)
fit.train()
end = time.time()
rhcOptimal = ef.value(rhc.getOptimal())
rhcTime = end-start
print "RHC optimum: " + str(rhcOptimal)
print "RHC time: " + str(rhcTime)
iterOptimalOut.append(rhcOptimal)
iterTimeOut.append(rhcTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
sa = SimulatedAnnealing(100, .95, hcp)
fit = FixedIterationTrainer(sa, niter*saMult)
fit.train()
end = time.time()
saOptimal = ef.value(sa.getOptimal())
saTime = end-start
print "SA optimum: " + str(saOptimal)
print "SA time: " + str(saTime)
iterOptimalOut.append(saOptimal)
iterTimeOut.append(saTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
ga = StandardGeneticAlgorithm(200, 150, 25, gap)
fit = FixedIterationTrainer(ga, niter*gaMult)
fit.train()
end = time.time()
gaOptimal = ef.value(ga.getOptimal())
gaTime = end - start
print "GA optimum: " + str(gaOptimal)
print "GA time: " + str(gaTime)
iterOptimalOut.append(gaOptimal)
iterTimeOut.append(gaTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
mimic = MIMIC(200, 100, pop)
fit = FixedIterationTrainer(mimic, niter*mimicMult)
fit.train()
end = time.time()
mimicOptimal = ef.value(mimic.getOptimal())
mimicTime = end - start
print "MIMIC optimum: " + str(mimicOptimal)
print "MIMIC time: " + str(mimicTime)
iterOptimalOut.append(mimicOptimal)
iterTimeOut.append(mimicTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
optimalOut.append(iterOptimalOut)
timeOut.append(iterTimeOut)
evalsOut.append(iterEvals)
return [optimalOut, timeOut, evalsOut]
