def test_run(self):
"""Handle quoted names"""
header = "7244:002ce8 FBpp0236088 gene=FBgn0208790 orthodb8_OG=EOG8MGTH1 orthodb8_level=32281 organism_name=`Drosophila virilis` uniprot_de=`GJ21671`"
d = orthodbutil.headerDict(header)
self.assertTrue(d['organism_name'] == 'Drosophila virilis')
def test_run(self): """Handle quoted names""" header = "7244:002ce8 FBpp0236088 gene=FBgn0208790 orthodb8_OG=EOG8MGTH1 orthodb8_level=32281 organism_name=`Drosophila virilis` uniprot_de=`GJ21671`" d = orthodbutil.headerDict(header) self.assertTrue(d['organism_name'] == 'Drosophila virilis')
def test_prime(self):
"""Handle prime quote"""
header = "1111077:0001b9 M1WGG3_CLAP2 gene=M1WGG3 orthodb8_OG=EOG8JHB13 orthodb8_level=4751 organism_name=`Claviceps purpurea 20.1` uniprot_de=`Probable tRNA 2`-O-ribose methyltransferase`"
d = orthodbutil.headerDict(header)
self.assertTrue(d['organism_name'] == 'Claviceps purpurea 20.1')
def test_prime(self): """Handle prime quote""" header = "1111077:0001b9 M1WGG3_CLAP2 gene=M1WGG3 orthodb8_OG=EOG8JHB13 orthodb8_level=4751 organism_name=`Claviceps purpurea 20.1` uniprot_de=`Probable tRNA 2`-O-ribose methyltransferase`" d = orthodbutil.headerDict(header) self.assertTrue(d['organism_name'] == 'Claviceps purpurea 20.1')