'VELOCITY U ','VELOCITY V ', \
'SALINITY ','TEMPERATURE ' ]
bnd.VARUNITS = ['M ', \
'M/S ','M/S ', \
' ',' ' ]
bnd.NVAR = bnd.NBV1
bnd.VARINDEX = range(bnd.NVAR)
# Sizes and mesh connectivity
bnd.NPLAN = slf.NPLAN
bnd.NDP2 = 2
bnd.NDP3 = 4
bnd.NPOIN2 = len(BOR)
bnd.NPOIN3 = bnd.NPOIN2 * slf.NPLAN
bnd.IPARAM = [0, 0, 0, 0, 0, 0, bnd.NPLAN, 0, 0, 0]
bnd.IPOB2 = BOR # /!\ Note that IPOBO keeps the original numbering
print ' +> masking and setting connectivity'
# Set the array that only includes elements of geo.IKLE2 with at least two nodes in BOR
MASK = geo.IKLE2[np.where(
np.sum(np.in1d(geo.IKLE2, np.sort(BOR -
1)).reshape(geo.NELEM2, geo.NDP2),
axis=1) == 2)]
IKLE2 = np.ravel(MASK)[np.in1d(MASK, np.sort(BOR - 1))].reshape(
len(MASK), 2) # this IKLE2 keeps the original numbering
# ~~> re-numbering IKLE2 as a local connectivity matrix
KNOLG, indices = np.unique(np.ravel(IKLE2), return_index=True)
KNOGL = dict(zip(KNOLG, range(len(KNOLG))))
bnd.IKLE2 = -np.ones_like(IKLE2, dtype=np.int)
for k in range(len(IKLE2)):
bnd.IKLE2[k] = [
KNOGL[IKLE2[k][0]], KNOGL[IKLE2[k][1]]
# Sizes and mesh connectivity
atm.NPLAN = slf.NPLAN # it should be 2D but why the heack not ...
atm.NDP2 = slf.NDP2
atm.NDP3 = slf.NDP3
atm.NPOIN2 = geo.NPOIN2
atm.NPOIN3 = geo.NPOIN2 * atm.NPLAN
atm.NELEM2 = geo.NELEM2
print ' +> setting connectivity'
if atm.NPLAN > 1:
atm.NELEM3 = geo.NELEM2 * (atm.NPLAN - 1)
atm.IKLE2 = geo.IKLE2
atm.IKLE3 = \
np.repeat(geo.NPOIN2*np.arange(atm.NPLAN-1),geo.NELEM2*atm.NDP3).reshape((geo.NELEM2*(atm.NPLAN-1),atm.NDP3)) + \
np.tile(np.add(np.tile(geo.IKLE2,2),np.repeat(geo.NPOIN2*np.arange(2),geo.NDP2)),(atm.NPLAN-1,1))
atm.IPOB2 = geo.IPOB2
atm.IPOB3 = np.ravel(
np.add(
np.repeat(geo.IPOB2,
atm.NPLAN).reshape((geo.NPOIN2, atm.NPLAN)),
geo.NPOIN2 * np.arange(atm.NPLAN)).T)
else:
atm.NELEM3 = geo.NELEM2
atm.IKLE2 = geo.IKLE2
atm.IKLE3 = geo.IKLE3
atm.IPOB2 = geo.IPOB2
atm.IPOB3 = geo.IPOB3
atm.IPARAM = [0, 0, 0, 0, 0, 0, atm.NPLAN, 0, 0, 0]
# Mesh coordinates
atm.MESHX = geo.MESHX
slf2d.NDP2 = 3
slf2d.NDP3 = 3
slf2d.NPOIN2 = n
slf2d.NPOIN3 = n
slf2d.NELEM2 = e
slf2d.NELEM3 = e
slf2d.IPARAM = [1, 0, 0, 0, 0, 0, 0, 0, 0, 0]
#print ' +> Set SELAFIN mesh'
slf2d.MESHX = x
slf2d.MESHY = y
#print ' +> Set SELAFIN IPOBO'
junkIPOB = np.zeros(n-len(b))
junkIPOB = junkIPOB.astype(np.int16)
slf2d.IPOB2 = np.hstack((b,junkIPOB))
slf2d.IPOB3 = slf2d.IPOB2
#print ' +> Set SELAFIN IKLE'
slf2d.IKLE2 = ikle
slf2d.IKLE3 = ikle
#print ' +> Set SELAFIN times and cores'
# these two lists are empty after constructor is instantiated
slf2d.tags['cores'].append(0)
slf2d.tags['times'].append(0)
#slf2d.tags = { 'times':[0] } # time (sec)
#slf2d.DATETIME = sel.DATETIME
slf2d.DATETIME = [2015, 1, 1, 1, 1, 1]
#slf2d.tags = { 'cores':[long(0)] } # time frame
