def to_client_json(self, model):
result = model.asdict()
# Participants that withdrew more than 48 hours ago should have fields other than
# WITHDRAWN_PARTICIPANT_FIELDS cleared.
if (model.withdrawalStatus == WithdrawalStatus.NO_USE
and model.withdrawalTime <
clock.CLOCK.now() - WITHDRAWN_PARTICIPANT_VISIBILITY_TIME):
result = {k: result.get(k) for k in WITHDRAWN_PARTICIPANT_FIELDS}
result['participantId'] = to_client_participant_id(model.participantId)
biobank_id = result.get('biobankId')
if biobank_id:
result['biobankId'] = to_client_biobank_id(biobank_id)
date_of_birth = result.get('dateOfBirth')
if date_of_birth:
result['ageRange'] = get_bucketed_age(date_of_birth,
clock.CLOCK.now())
else:
result['ageRange'] = UNSET
format_json_hpo(result, self.hpo_dao, 'hpoId')
_initialize_field_type_sets()
for fieldname in _DATE_FIELDS:
format_json_date(result, fieldname)
for fieldname in _CODE_FIELDS:
format_json_code(result, self.code_dao, fieldname)
for fieldname in _ENUM_FIELDS:
format_json_enum(result, fieldname)
if (model.withdrawalStatus == WithdrawalStatus.NO_USE
or model.suspensionStatus == SuspensionStatus.NO_CONTACT):
result['recontactMethod'] = 'NO_CONTACT'
# Strip None values.
result = {k: v for k, v in result.iteritems() if v is not None}
return result
def _add_age_range_metrics(dates_and_metrics, date_of_birth, now):
creation_date = dates_and_metrics[0][0].date()
now = now or context.get().mapreduce_spec.mapper.params.get('now')
# Add entries between the creation date and now for the participant's age range.
start_age_range = get_bucketed_age(date_of_birth, creation_date)
difference_in_years = relativedelta(creation_date, date_of_birth).years
year = relativedelta(years=1)
date = date_of_birth + relativedelta(years=difference_in_years + 1)
previous_age_range = start_age_range
while date and date <= now.date():
age_range = get_bucketed_age(date_of_birth, date)
if age_range != previous_age_range:
dates_and_metrics.append((datetime(year=date.year, month=date.month, day=date.day),
make_metric(AGE_RANGE_METRIC, age_range)))
previous_age_range = age_range
date = date + year
return start_age_range
def to_client_json(self, model):
result = model.asdict()
# Participants that withdrew more than 48 hours ago should have fields other than
# WITHDRAWN_PARTICIPANT_FIELDS cleared.
if (model.withdrawalStatus == WithdrawalStatus.NO_USE and
(model.withdrawalTime is None or model.withdrawalTime <
clock.CLOCK.now() - WITHDRAWN_PARTICIPANT_VISIBILITY_TIME)):
result = {k: result.get(k) for k in WITHDRAWN_PARTICIPANT_FIELDS}
elif model.withdrawalStatus != WithdrawalStatus.NO_USE and \
model.suspensionStatus == SuspensionStatus.NO_CONTACT:
for i in SUSPENDED_PARTICIPANT_FIELDS:
result[i] = UNSET
result['participantId'] = to_client_participant_id(model.participantId)
biobank_id = result.get('biobankId')
if biobank_id:
result['biobankId'] = to_client_biobank_id(biobank_id)
date_of_birth = result.get('dateOfBirth')
if date_of_birth:
result['ageRange'] = get_bucketed_age(date_of_birth,
clock.CLOCK.now())
else:
result['ageRange'] = UNSET
if result.get('primaryLanguage') is None:
result['primaryLanguage'] = UNSET
if 'organizationId' in result:
result['organization'] = result['organizationId']
del result['organizationId']
format_json_org(result, self.organization_dao, 'organization')
if result.get('genderIdentityId'):
del result[
'genderIdentityId'] # deprecated in favor of genderIdentity
# Note: leaving for future use if we go back to using a relationship to PatientStatus table.
# def format_patient_status_record(status_obj):
# status_dict = self.patient_status_dao.to_client_json(status_obj)
# return {
# 'organization': status_dict['organization'],
# 'status': status_dict['patient_status'],
# }
# result['patientStatus'] = map(format_patient_status_record, model.patientStatus)
result['patientStatus'] = model.patientStatus
format_json_hpo(result, self.hpo_dao, 'hpoId')
result['awardee'] = result['hpoId']
_initialize_field_type_sets()
for fieldname in _DATE_FIELDS:
format_json_date(result, fieldname)
for fieldname in _CODE_FIELDS:
format_json_code(result, self.code_dao, fieldname)
for fieldname in _ENUM_FIELDS:
format_json_enum(result, fieldname)
for fieldname in _SITE_FIELDS:
format_json_site(result, self.site_dao, fieldname)
if (model.withdrawalStatus == WithdrawalStatus.NO_USE
or model.suspensionStatus == SuspensionStatus.NO_CONTACT):
result['recontactMethod'] = 'NO_CONTACT'
# Strip None values.
result = {k: v for k, v in result.iteritems() if v is not None}
return result