def upload(self,
filename,
name=None,
path=None,
type=None,
ofile=None,
block_size=1024):
"""
Utility method to upload a file to the server.
"""
if not self.__sf:
raise omero.ClientError("No session. Use createSession first.")
import os, types
if not filename or not isinstance(filename, types.StringType):
raise omero.ClientError("Non-null filename must be provided")
if not os.path.exists(filename):
raise omero.ClientError("File does not exist: " + filename)
from path import path as __path__
filepath = __path__(filename)
file = open(filename, 'rb')
try:
size = os.path.getsize(file.name)
if block_size > size:
block_size = size
if not ofile:
ofile = omero.model.OriginalFileI()
ofile.hash = omero.rtypes.rstring(self.sha1(file.name))
ofile.hasher = omero.model.ChecksumAlgorithmI()
ofile.hasher.value = omero.rtypes.rstring("SHA1-160")
abspath = filepath.normpath().abspath()
if not ofile.name:
if name:
ofile.name = omero.rtypes.rstring(name)
else:
ofile.name = omero.rtypes.rstring(str(abspath.basename()))
if not ofile.path:
ofile.path = omero.rtypes.rstring(
str(abspath.dirname()) + os.path.sep)
if not ofile.mimetype:
if type:
# ofile.mimetype = 'application/octet-stream' by default
ofile.mimetype = omero.rtypes.rstring(type)
# Disabled with group permissions #1434
# if permissions:
# ofile.details.permissions = permissions
up = self.__sf.getUpdateService()
ofile = up.saveAndReturnObject(ofile)
prx = self.__sf.createRawFileStore()
try:
prx.setFileId(ofile.id.val)
prx.truncate(size) # ticket:2337
self.write_stream(file, prx, block_size)
finally:
prx.close()
finally:
file.close()
return ofile
def upload(self, filename, name = None, path = None,
type = None, ofile = None, block_size = 1024):
"""
Utility method to upload a file to the server.
"""
if not self.__sf:
raise omero.ClientError("No session. Use createSession first.")
import os, types
if not filename or not isinstance(filename, types.StringType):
raise omero.ClientError("Non-null filename must be provided")
if not os.path.exists(filename):
raise omero.ClientError("File does not exist: " + filename)
from path import path as __path__
filepath = __path__(filename)
file = open(filename, 'rb')
try:
size = os.path.getsize(file.name)
if block_size > size:
block_size = size
if not ofile:
ofile = omero.model.OriginalFileI()
ofile.hash = omero.rtypes.rstring(self.sha1(file.name))
ofile.hasher = omero.model.ChecksumAlgorithmI()
ofile.hasher.value = omero.rtypes.rstring("SHA1-160")
abspath = filepath.normpath().abspath()
if not ofile.name:
if name:
ofile.name = omero.rtypes.rstring(name)
else:
ofile.name = omero.rtypes.rstring(str(abspath.basename()))
if not ofile.path:
ofile.path = omero.rtypes.rstring(str(abspath.dirname())+os.path.sep)
if not ofile.mimetype:
if type:
# ofile.mimetype = 'application/octet-stream' by default
ofile.mimetype = omero.rtypes.rstring(type)
# Disabled with group permissions #1434
# if permissions:
# ofile.details.permissions = permissions
up = self.__sf.getUpdateService()
ofile = up.saveAndReturnObject(ofile)
prx = self.__sf.createRawFileStore()
try:
prx.setFileId(ofile.id.val)
prx.truncate(size) # ticket:2337
self.write_stream(file, prx, block_size)
finally:
prx.close()
finally:
file.close()
return ofile