def marginal_gene_correlations(self):
"""
running marginal gene-gene correlations
"""
Y = self.phenoreader.getMatrix()
corr, pv = pcor.corrParallelSym(Y)
self.genecorr_reader = reader.MatrixReader(corr)
return corr, pv
def marginal_gene_correlations(self):
"""
running marginal gene-gene correlations
"""
Y = self.phenoreader.getMatrix()
corr, pv = pcor.corrParallelSym(Y)
self.genecorr_reader = reader.MatrixReader(corr)
return corr, pv
def marginal_gene_correlations(self, startTraitIdx=0, nTraits=np.inf):
"""
running marginal gene-gene correlations
"""
Y = self.phenoreader.getMatrix()
if startTraitIdx==0 and np.isinf(nTraits):
corr, pv = pcor.corrParallelSym(Y)
else:
corr, pv = pcor.corrParallel(Y[startTraitIdx:startTraitIdx+nTraits],Y)
self.genecorr_reader = reader.MatrixReader(pv)
return corr,pv
def marginal_gene_correlations(self, startTraitIdx=0, nTraits=np.inf):
"""
running marginal gene-gene correlations
"""
Y = self.phenoreader.getMatrix()
if startTraitIdx == 0 and np.isinf(nTraits):
corr, pv = pcor.corrParallelSym(Y)
else:
corr, pv = pcor.corrParallel(Y[startTraitIdx : startTraitIdx + nTraits], Y)
self.genecorr_reader = reader.MatrixReader(pv)
return corr, pv
