def test_poisson_solver_1d(): """ test the poisson solver on 1d grids """ # solve Laplace's equation grid = UnitGrid([4]) field = ScalarField(grid) res = field.solve_poisson([{"value": -1}, {"value": 3}]) np.testing.assert_allclose(res.data, grid.axes_coords[0] - 1) res = field.solve_poisson([{"value": -1}, {"derivative": 1}]) np.testing.assert_allclose(res.data, grid.axes_coords[0] - 1) # test Poisson equation with 2nd Order BC res = field.solve_poisson([{"value": -1}, "extrapolate"]) # solve Poisson's equation grid = CartesianGrid([[0, 1]], 4) field = ScalarField(grid, data=1) res = field.copy() field.solve_poisson([{"value": 1}, {"derivative": 1}], out=res) xs = grid.axes_coords[0] np.testing.assert_allclose(res.data, 1 + 0.5 * xs**2, rtol=1e-2) # test inconsistent problem field.data = 1 with pytest.raises(RuntimeError, match="Neumann"): field.solve_poisson({"derivative": 0})
def test_scalars(): """test some scalar fields""" grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, 4]) s1 = ScalarField(grid, np.full(grid.shape, 1)) s2 = ScalarField(grid, np.full(grid.shape, 2)) assert s1.average == pytest.approx(1) assert s1.magnitude == pytest.approx(1) s3 = s1 + s2 assert s3.grid == grid np.testing.assert_allclose(s3.data, 3) s1 += s2 np.testing.assert_allclose(s1.data, 3) s2 = FieldBase.from_state(s1.attributes, data=s1.data) assert s1 == s2 assert s1.grid is s2.grid attrs = ScalarField.unserialize_attributes(s1.attributes_serialized) s2 = FieldBase.from_state(attrs, data=s1.data) assert s1 == s2 assert s1.grid is not s2.grid # test options for plotting images if module_available("matplotlib"): s1.plot(transpose=True, colorbar=True) s3 = ScalarField(grid, s1) assert s1 is not s3 assert s1 == s3 assert s1.grid is s3.grid # multiplication with numpy arrays arr = np.random.randn(*grid.shape) np.testing.assert_allclose((arr * s1).data, (s1 * arr).data)
def test_complex_methods(): """test special methods for complex data type""" grid = UnitGrid([2, 2]) f = ScalarField(grid, 1j) for backend in ["scipy", "numba"]: val = f.interpolate([1, 1], backend=backend) np.testing.assert_allclose(val, np.array([1j, 1j])) f = ScalarField(grid, 1 + 2j) np.testing.assert_allclose(f.project("x").data, np.full((2,), 2 + 4j)) np.testing.assert_allclose(f.slice({"x": 1}).data, np.full((2,), 1 + 2j))
def test_interpolation_singular(): """ test interpolation on singular dimensions """ grid = UnitGrid([1]) field = ScalarField(grid, data=3) # test constant boundary conditions bc = [{"type": "value", "value": 1}, {"type": "value", "value": 5}] x = np.linspace(0, 1, 7).reshape((7, 1)) y = field.interpolate(x, method="numba", bc=bc) np.testing.assert_allclose(y, 1 + 4 * x.ravel()) # test derivative boundary conditions bc = [{ "type": "derivative", "value": -2 }, { "type": "derivative", "value": 2 }] x = np.linspace(0, 1, 7).reshape((7, 1)) y = field.interpolate(x, method="numba", bc=bc) np.testing.assert_allclose(y, 2 + 2 * x.ravel()) # test boundary interpolation for upper in [True, False]: val = field.get_boundary_values(axis=0, upper=upper, bc=[{"value": 1}]) assert val == pytest.approx(1)
def test_interpolation_inhomogeneous_bc(): """test field interpolation with inhomogeneous boundary condition""" sf = ScalarField(UnitGrid([3, 3], periodic=False)) x = 1 + np.random.random() bc = ["natural", {"type": "value", "value": "x"}] v = sf.interpolate([x, 0], backend="numba", bc=bc) assert x == pytest.approx(v)
def test_interpolation_singular(): """test interpolation on singular dimensions""" grid = UnitGrid([1]) field = ScalarField(grid, data=3) # test constant boundary conditions x = np.linspace(0, 1, 7).reshape((7, 1)) y = field.interpolate(x, backend="numba") np.testing.assert_allclose(y, 3)
def test_complex_dtype(): """test the support of a complex data type""" grid = UnitGrid([2]) f = ScalarField(grid, 1j) assert f.is_complex np.testing.assert_allclose(f.data, np.array([1j, 1j])) f = ScalarField(grid, 1) assert not f.is_complex with pytest.raises(np.core._exceptions.UFuncTypeError): f += 1j f = f + 1j assert f.is_complex np.testing.assert_allclose(f.data, np.full((2,), 1 + 1j)) assert f.integral == pytest.approx(2 + 2j) assert f.average == pytest.approx(1 + 1j) np.testing.assert_allclose(f.to_scalar("abs").data, np.full((2,), np.sqrt(2))) assert f.magnitude == pytest.approx(np.sqrt(2))
def test_corner_interpolation(): """test whether the field can also be interpolated up to the corner of the grid""" grid = UnitGrid([1, 1], periodic=False) field = ScalarField(grid) field.set_ghost_cells({"value": 1}) assert field.interpolate(np.array([0.5, 0.5])) == pytest.approx(0.0) assert field.interpolate(np.array([0.0, 0.5])) == pytest.approx(0.0) assert field.interpolate(np.array([0.5, 0.0])) == pytest.approx(0.0) assert field.interpolate(np.array([0.0, 0.0])) == pytest.approx(0.0)
def test_boundary_interpolation_1d(): """test boundary interpolation for 1d fields""" grid = UnitGrid([5]) field = ScalarField(grid, np.arange(grid.shape[0])) # test boundary interpolation bndry_val = 0.25 for bndry in grid._iter_boundaries(): val = field.get_boundary_values(*bndry, bc={"value": bndry_val}) np.testing.assert_allclose(val, bndry_val)
def test_insert_polar(): """test the `insert` method for polar systems""" grid = PolarSymGrid(3, 5) f = ScalarField(grid) g = f.copy() a = np.random.random() for r in np.linspace(0, 3, 8).reshape(8, 1): f.data = g.data = 0 f.insert(r, a) assert f.integral == pytest.approx(a) grid.make_inserter_compiled()(g.data, r, a) np.testing.assert_array_almost_equal(f.data, g.data)
def test_slice_positions(): """test scalar slicing at standard positions""" grid = UnitGrid([3, 1]) sf = ScalarField(grid, np.arange(3).reshape(3, 1)) assert sf.slice({"x": "min"}).data == 0 assert sf.slice({"x": "mid"}).data == 1 assert sf.slice({"x": "max"}).data == 2 with pytest.raises(ValueError): sf.slice({"x": "foo"}) with pytest.raises(ValueError): sf.slice({"x": 0}, method="nonsense")
def test_slice(example_grid_nd): """test scalar slicing""" sf = ScalarField(example_grid_nd, 0.5) p = example_grid_nd.get_random_point() for i in range(example_grid_nd.num_axes): sf_slc = sf.slice({example_grid_nd.axes[i]: p[i]}) np.testing.assert_allclose(sf_slc.data, 0.5) assert sf_slc.grid.dim < example_grid_nd.dim assert sf_slc.grid.num_axes == example_grid_nd.num_axes - 1 with pytest.raises(boundaries.DomainError): sf.slice({example_grid_nd.axes[0]: -10}) with pytest.raises(ValueError): sf.slice({"q": 0})
def test_interpolation_singular(): """test interpolation on singular dimensions""" grid = UnitGrid([1]) field = ScalarField(grid, data=3) # test constant boundary conditions x = np.linspace(0, 1, 7).reshape((7, 1)) y = field.interpolate(x, backend="numba") np.testing.assert_allclose(y, 3) # # test boundary interpolation for upper in [True, False]: val = field.get_boundary_values(axis=0, upper=upper, bc=[{"value": 1}]) assert val == pytest.approx(1)
def test_interpolation_mutable(): """test interpolation on mutable fields""" grid = UnitGrid([2], periodic=True) field = ScalarField(grid) for backend in ["numba", "scipy"]: field.data = 1 np.testing.assert_allclose(field.interpolate([0.5], backend=backend), 1) field.data = 2 np.testing.assert_allclose(field.interpolate([0.5], backend=backend), 2) # test overwriting field values data = np.full_like(field.data, 3) intp = field.make_interpolator(backend="numba") np.testing.assert_allclose(intp(np.array([0.5]), data), 3)
def test_gradient(): """test the gradient operator""" grid = CartesianGrid([[0, 2 * np.pi], [0, 2 * np.pi]], [16, 16], periodic=True) x, y = grid.cell_coords[..., 0], grid.cell_coords[..., 1] data = np.cos(x) + np.sin(y) s = ScalarField(grid, data) v = s.gradient("natural") assert v.data.shape == (2, 16, 16) np.testing.assert_allclose(v.data[0], -np.sin(x), rtol=0.1, atol=0.1) np.testing.assert_allclose(v.data[1], np.cos(y), rtol=0.1, atol=0.1) s.gradient("natural", out=v) assert v.data.shape == (2, 16, 16) np.testing.assert_allclose(v.data[0], -np.sin(x), rtol=0.1, atol=0.1) np.testing.assert_allclose(v.data[1], np.cos(y), rtol=0.1, atol=0.1)
def test_boundary_interpolation_1d(): """test boundary interpolation for 1d fields""" grid = UnitGrid([5]) field = ScalarField(grid, np.arange(grid.shape[0])) # test boundary interpolation bndry_val = 0.25 for bndry in grid._iter_boundaries(): val = field.get_boundary_values(*bndry, bc={"value": bndry_val}) np.testing.assert_allclose(val, bndry_val) # boundary conditions have already been enforced ev = field.make_get_boundary_values(*bndry) out = ev() np.testing.assert_allclose(out, bndry_val) ev(data_full=field._data_full, out=out) np.testing.assert_allclose(out, bndry_val)
def test_poisson_solver_2d(): """ test the poisson solver on 2d grids """ grid = CartesianGrid([[0, 2 * np.pi]] * 2, 16) bcs = [{"value": "sin(y)"}, {"value": "sin(x)"}] # solve Laplace's equation field = ScalarField(grid) res = field.solve_poisson(bcs) xs = grid.cell_coords[..., 0] ys = grid.cell_coords[..., 1] # analytical solution was obtained with Mathematica expect = (np.cosh(np.pi - ys) * np.sin(xs) + np.cosh(np.pi - xs) * np.sin(ys)) / np.cosh(np.pi) np.testing.assert_allclose(res.data, expect, atol=1e-2, rtol=1e-2) # test more complex case for exceptions res = field.solve_poisson([{"value": "sin(y)"}, {"curvature": "sin(x)"}])
def test_insert_scalar(example_grid): """test the `insert` method""" f = ScalarField(example_grid) a = np.random.random() c = tuple(example_grid.point_to_cell(example_grid.get_random_point())) p = example_grid.cell_to_point(c, cartesian=False) f.insert(p, a) assert f.data[c] == pytest.approx(a / example_grid.cell_volumes[c]) f.insert(example_grid.get_random_point(cartesian=False), a) assert f.integral == pytest.approx(2 * a) f.data = 0 # reset insert = example_grid.make_inserter_compiled() c = tuple(example_grid.point_to_cell(example_grid.get_random_point())) p = example_grid.cell_to_point(c, cartesian=False) insert(f.data, p, a) assert f.data[c] == pytest.approx(a / example_grid.cell_volumes[c]) insert(f.data, example_grid.get_random_point(cartesian=False), a) assert f.integral == pytest.approx(2 * a)
def test_insert_scalar(grid): """test the `insert` method""" f = ScalarField(grid) a = np.random.random() c = tuple(grid.get_random_point(coords="cell")) p = grid.transform(c, "cell", "grid") f.insert(p, a) assert f.data[c] == pytest.approx(a / grid.cell_volumes[c]) f.insert(grid.get_random_point(coords="grid"), a) assert f.integral == pytest.approx(2 * a) f.data = 0 # reset insert = grid.make_inserter_compiled() c = tuple(grid.get_random_point(coords="cell")) p = grid.transform(c, "cell", "grid") insert(f.data, p, a) assert f.data[c] == pytest.approx(a / grid.cell_volumes[c]) insert(f.data, grid.get_random_point(coords="grid"), a) assert f.integral == pytest.approx(2 * a)
def test_generic_derivatives(grid): """test generic derivatives operators""" sf = ScalarField.random_uniform(grid, rng=np.random.default_rng(0)) sf_grad = sf.gradient("auto_periodic_neumann") sf_lap = ScalarField(grid) # iterate over all grid axes for axis_id, axis in enumerate(grid.axes): # test first derivatives sf_deriv = sf._apply_operator(f"d_d{axis}", bc="auto_periodic_neumann") assert isinstance(sf_deriv, ScalarField) np.testing.assert_allclose(sf_deriv.data, sf_grad.data[axis_id]) # accumulate second derivatives for Laplacian sf_lap += sf._apply_operator(f"d2_d{axis}2", bc="auto_periodic_neumann") sf_laplace = sf.laplace("auto_periodic_neumann") if isinstance(grid, CartesianGrid): # Laplacian is the sum of second derivatives in Cartesian coordinates np.testing.assert_allclose(sf_lap.data, sf_laplace.data) else: # the two deviate in curvilinear coordinates assert not np.allclose(sf_lap.data, sf_laplace.data)
def test_complex_operators(): """test differential operators for complex data type""" f = ScalarField(UnitGrid([2, 2]), 1j) assert f.laplace("natural").magnitude == pytest.approx(0)
def test_complex_plotting(): """test plotting of complex fields""" for dim in (1, 2): f = ScalarField(UnitGrid([3] * dim), 1j) f.plot()