def test_ssi_fetch(self):
ceasel.create_ssi(self.file_path)
index = ceasel.open_ssi(self.file_path)
seq1 = index['sequence1']
self.assertTrue(seq1 is not None)
self.assertEqual(5, len(seq1))
self.assertEqual('sequence1', seq1.name)
self.assertEqual('d1', seq1.description)
self.assertEqual('ACCGT', seq1.seq)
seq2 = index['sequence2']
self.assertTrue(seq2 is not None)
def test_ssi_fetch(self):
ceasel.create_ssi(self.file_path)
index = ceasel.open_ssi(self.file_path)
seq1 = index['sequence1']
self.assertTrue(seq1 is not None)
self.assertEqual(5, len(seq1))
self.assertEqual('sequence1', seq1.name)
self.assertEqual('d1', seq1.description)
self.assertEqual('ACCGT', seq1.seq)
seq2 = index['sequence2']
self.assertTrue(seq2 is not None)
def test_ssi_fetch_keyerror(self):
ceasel.create_ssi(self.file_path)
index = ceasel.open_ssi(self.file_path)
self.assertRaises(KeyError, index.__getitem__, 'sequence3')
def test_ssi_create_nooverrwrite(self):
ceasel.create_ssi(self.file_path)
self.assertTrue(os.path.isfile(self.ssi_path))
self.assertRaises(IOError, ceasel.create_ssi, self.file_path)
def test_ssi_create(self):
res = ceasel.create_ssi(self.file_path)
self.assertEqual(2, res, msg='2 sequences indexed')
self.assertTrue(os.path.isfile(self.ssi_path))
def test_ssi_fetch_keyerror(self):
ceasel.create_ssi(self.file_path)
index = ceasel.open_ssi(self.file_path)
self.assertRaises(KeyError, index.__getitem__, 'sequence3')
def test_ssi_create_nooverrwrite(self):
ceasel.create_ssi(self.file_path)
self.assertTrue(os.path.isfile(self.ssi_path))
self.assertRaises(IOError, ceasel.create_ssi, self.file_path)
def test_ssi_create(self):
res = ceasel.create_ssi(self.file_path)
self.assertEqual(2, res, msg='2 sequences indexed')
self.assertTrue(os.path.isfile(self.ssi_path))
