class TestTaxomachine(unittest.TestCase):
def setUp(self):
d = get_test_ot_service_domains()
self.taxomachine = Taxomachine(d)
def testTaxon(self):
if not self.taxomachine.use_v1:
r = self.taxomachine.taxon(515698, include_lineage=True)
for k in [u'unique_name', u'taxonomic_lineage', u'rank', u'synonyms',
u'ot:ottId', u'flags', u'ot:ottTaxonName', u'node_id']:
self.assertTrue(k in r)
def testSubtree(self):
if not self.taxomachine.use_v1:
r = self.taxomachine.subtree(515698)
self.assertTrue(r['subtree'].startswith('('))
def testLica(self):
if not self.taxomachine.use_v1:
r = self.taxomachine.lica([515698, 590452, 409712, 643717], include_lineage=True)
self.assertTrue('lica' in r)
self.assertTrue('ott_ids_not_found' in r)
l = r['lica']
for k in [u'unique_name', u'taxonomic_lineage', u'rank', u'synonyms',
u'ot:ottId', u'flags', u'ot:ottTaxonName', u'node_id']:
self.assertTrue(k in l)
def testInfo(self):
if not self.taxomachine.use_v1:
cdict = self.taxomachine.info()
for k in ['source', 'weburl', 'author']:
self.assertTrue(k in cdict)
def testContexts(self):
cdict = self.taxomachine.contexts()
self.assertTrue('PLANTS' in cdict)
def testBogusName(self):
resp = self.taxomachine.TNRS('bogustaxonomicname')
self.assertEqual(resp['results'], [])
def testSkunkName(self):
name = u'Mephitis mephitis'
resp = self.taxomachine.TNRS(name, 'Mammals')
self.assertEqual(len(resp['results']), 1)
el = resp['results'][0]['matches'][0]
self.assertEqual(el['matched_name'], name)
def testSkunkNameExact(self):
name = u'Mephitis mephitis'
resp = self.taxomachine.TNRS(name, 'Mammals')
self.assertFalse(resp['results'][0]['matches'][0]['is_approximate_match'])
def testHomonymName(self):
name = 'Nandina'
resp = self.taxomachine.TNRS(name)
self.assertEqual(len(resp['results'][0]['matches']), 2)
resp = self.taxomachine.TNRS(name, 'Animals')
self.assertEqual(len(resp['results'][0]['matches']), 1)
resp = self.taxomachine.TNRS(name, 'Flowering plants')
self.assertEqual(len(resp['results'][0]['matches']), 1)
def setUp(self):
d = get_test_ot_service_domains()
self.taxomachine = Taxomachine(d)
class TestTaxomachine(unittest.TestCase):
def setUp(self):
d = get_test_ot_service_domains()
self.taxomachine = Taxomachine(d)
def testTaxon(self):
if not self.taxomachine.use_v1:
r = self.taxomachine.taxon(515698, include_lineage=True)
for k in [
u'unique_name', u'taxonomic_lineage', u'rank', u'synonyms',
u'ot:ottId', u'flags', u'ot:ottTaxonName', u'node_id'
]:
self.assertTrue(k in r)
def testSubtree(self):
if not self.taxomachine.use_v1:
r = self.taxomachine.subtree(515698)
self.assertTrue(r['subtree'].startswith('('))
def testLica(self):
if not self.taxomachine.use_v1:
r = self.taxomachine.lica([515698, 590452, 409712, 643717],
include_lineage=True)
self.assertTrue('lica' in r)
self.assertTrue('ott_ids_not_found' in r)
l = r['lica']
for k in [
u'unique_name', u'taxonomic_lineage', u'rank', u'synonyms',
u'ot:ottId', u'flags', u'ot:ottTaxonName', u'node_id'
]:
self.assertTrue(k in l)
def testInfo(self):
if not self.taxomachine.use_v1:
cdict = self.taxomachine.info()
for k in ['source', 'weburl', 'author']:
self.assertTrue(k in cdict)
def testContexts(self):
cdict = self.taxomachine.contexts()
self.assertTrue('PLANTS' in cdict)
def testBogusName(self):
resp = self.taxomachine.TNRS('bogustaxonomicname')
self.assertEqual(resp['results'], [])
def testSkunkName(self):
name = u'Mephitis mephitis'
resp = self.taxomachine.TNRS(name, 'Mammals')
self.assertEqual(len(resp['results']), 1)
el = resp['results'][0]['matches'][0]
self.assertEqual(el['matched_name'], name)
def testSkunkNameExact(self):
name = u'Mephitis mephitis'
resp = self.taxomachine.TNRS(name, 'Mammals')
self.assertFalse(
resp['results'][0]['matches'][0]['is_approximate_match'])
def testHomonymName(self):
name = 'Drosophila'
resp = self.taxomachine.TNRS(name)
self.assertEqual(len(resp['results'][0]['matches']), 2)
resp = self.taxomachine.TNRS(name, 'Animals')
self.assertEqual(len(resp['results'][0]['matches']), 1)
resp = self.taxomachine.TNRS(name, 'Fungi')
self.assertEqual(len(resp['results'][0]['matches']), 1)
def setUp(self):
d = get_test_ot_service_domains()
self.taxomachine = Taxomachine(d)
