def update():
global EX, ARRAY_NAME, KEF
# There is a bug in batch update that kills kv
k = kef.Kef(KEF)
k.open()
k.read()
k.rewind()
ARRAY_NAME = None
while True:
p, kv = k.next()
if not p:
break
if 'array_name_a' in kv:
ARRAY_NAME = kv['array_name_a']
else:
LOGGER.error(
"Kef file does not contain entry for array_name_a. "
"Can not continue!")
return False
ref = EX.ph5_g_reports.ph5_t_report
if p not in columns.TABLES:
LOGGER.warning("No table reference for key: {0}. "
"Possibly ph5 file is not open or initialized?"
.format(p))
key = []
errs_keys, errs_required = columns.validate(ref, kv, key)
for e in errs_keys + errs_required:
LOGGER.error(e)
key = None
columns.populate(ref, kv, key)
return True
def update():
global EX, ARRAY_NAME, KEF
# There is a bug in batch update that kills kv
k = kef.Kef(KEF)
k.open()
k.read()
#k.batch_update ()
#k.close () ; sys.exit ()
k.rewind()
ARRAY_NAME = None
while 1:
p, kv = k.next()
if not p: break
if kv.has_key('array_name_a'):
ARRAY_NAME = kv['array_name_a']
else:
sys.stderr.write(
"Error: Kef file does not contain entry for array_name_a.\nCan not continue!\n"
)
return False
# XXX We always append XXX
#mo = updateRE.match (p)
ref = EX.ph5_g_reports.ph5_t_report
if not columns.TABLES.has_key(p):
sys.stderr.write("Warning: No table reference for key: %s\n" % p)
sys.stderr.write("Possibly ph5 file is not open or initialized?\n")
key = []
errs_keys, errs_required = columns.validate(ref, kv, key)
for e in errs_keys + errs_required:
sys.stderr.write(e + '\n')
key = None
columns.populate(ref, kv, key)
return True
def batch_update(self, trace=False):
''' Batch update ph5 file from kef file '''
err = False
self.rewind()
p, kv = self.next()
while p:
if trace is True:
kys = kv.keys()
print("=-" * 30)
print("{0}".format(p))
for k in kys:
print("\t{0} = {1}".format(k, kv[k]))
DELETE = False
# Update or Append or Delete
mo = deleteRE.match(p)
if mo:
DELETE = True
else:
mo = updateRE.match(p)
key = []
if mo:
p, k = mo.groups()
key.append(k)
# columns.TABLES keeps a dictionary of key = table name, value =
# reference to table
if p not in columns.TABLES:
LOGGER.warning("No table reference for key: {0}".format(p))
LOGGER.info("Possibly ph5 file is not open or initialized?")
p, kv = self.next()
continue
# Get handle
ref = columns.TABLES[p]
# key needs to be list for columns.validate
if trace is True:
LOGGER.info("Validating...")
errs_keys, errs_required = columns.validate(ref, kv, key)
for e in errs_keys + errs_required:
err = True
LOGGER.error(e)
if trace is True:
LOGGER.info("Done")
if len(key) == 0:
key = None
else:
key = key.pop(0)
if DELETE:
if trace is True:
LOGGER.info("Deleting...")
else:
columns.delete(ref, kv[key], key)
else:
if trace is True:
LOGGER.info("Updating...")
else:
columns.populate(ref, kv, key)
if trace is True:
LOGGER.info("Skipped")
p, kv = self.next()
return err
def batch_update(self, trace=False):
''' Batch update ph5 file from kef file '''
err = False
self.rewind()
p, kv = self.next()
while p:
if trace == True:
kys = kv.keys()
sys.stderr.write('=-' * 30)
sys.stderr.write("\n%s\n" % p)
for k in kys:
sys.stderr.write("\t%s = %s\n" % (k, kv[k]))
DELETE = False
# Update or Append or Delete
mo = deleteRE.match(p)
if mo:
DELETE = True
else:
mo = updateRE.match(p)
key = []
if mo:
p, k = mo.groups()
key.append(k)
#if receiverRE.match (p) :
## We are trying to update something in a Receivers_g
#sys.stderr.write ("Warning: Attempting to modify something under /Experiment_g/Receivers_g.\n")
# columns.TABLES keeps a dictionary of key = table name, value = reference to table
if not columns.TABLES.has_key(p):
sys.stderr.write("Warning: No table reference for key: %s\n" %
p)
sys.stderr.write(
"Possibly ph5 file is not open or initialized?\n")
p, kv = self.next()
continue
# Get handle
ref = columns.TABLES[p]
# key needs to be list for columns.validate
if trace == True:
sys.stderr.write("Validating...\n")
errs_keys, errs_required = columns.validate(ref, kv, key)
for e in errs_keys + errs_required:
err = True
sys.stderr.write(e + '\n')
if trace == True:
sys.stderr.write("Done\n")
if len(key) == 0:
key = None
else:
key = key.pop(0)
if DELETE:
if trace == True:
sys.stderr.write("Deleting...")
else:
columns.delete(ref, kv[key], key)
else:
if trace == True:
sys.stderr.write("Updating...")
else:
columns.populate(ref, kv, key)
if trace == True:
sys.stderr.write("Skipped\n")
p, kv = self.next()
return err