def _run(self, runnable, job_path):
"""Run CWL job in Galaxy."""
self._ctx.vlog("Serving artifact [%s] with Galaxy." % (runnable,))
with self._serve([runnable]) as config:
self._ctx.vlog("Running job path [%s]" % job_path)
run_response = execute(config, runnable, job_path, **self._kwds)
return run_response
def _run(self, runnable, job_path):
"""Run CWL job in Galaxy."""
self._ctx.vlog("Serving artifact [%s] with Galaxy." % (runnable,))
with self.ensure_runnables_served([runnable]) as config:
self._ctx.vlog("Running job path [%s]" % job_path)
run_response = execute(self._ctx, config, runnable, job_path, **self._kwds)
return run_response
def _run(self, runnable, job_path):
"""Run CWL job in Galaxy."""
self._ctx.vlog("Serving artifact [%s] with Galaxy." % (runnable,))
with self.ensure_runnables_served([runnable]) as config:
self._ctx.vlog("Running job path [%s]" % job_path)
if self._ctx.verbose:
self._ctx.log("Running Galaxy with API configuration [%s]" % config.user_api_config)
run_response = execute(self._ctx, config, runnable, job_path, **self._kwds)
return run_response