def execute(self, job):
super(LocalRunner, self).execute(job)
result = JobResult(has_failed=True, details=job.info.copy())
if job.info['queue'] == 'default':
report_filename = self.get_report_filepath(job)
with open(report_filename, 'w+') as report:
report.write('Submitting job [%d] with report file: %s \n' % \
(job.id, report_filename))
logger.debug('Submitting job [%d] with report file: %s' % \
(job.id, report_filename))
pidfile_path = self.get_pidfile_path(job.id)
result.details['local_pidfile_path'] = pidfile_path
result.details['local_queue'] = job.info['queue']
try:
result.details['local_id'] = ProcessUtil.exec_process(
job.info['command'],
report_filename,
pidfile_path)
result.has_failed = False
except Exception as exception:
result.error = str(exception)
logger.warn(result.error)
else:
result.error = 'Job info has unknown queue.'
logger.warn(result.error)
return result
def execute(self, job):
super(LsfRunner, self).execute(job)
result = JobResult(has_failed=True, details=job.info.copy())
stderr = StringIO()
if job.info["queue"] == "default":
report = self.get_report_filepath(job)
result.output = bsub("-o", report, _in=job.info["command"], _err=stderr).strip()
result.error = stderr.getvalue().strip()
logger.debug("bsub output: %s" % result.output)
logger.debug("bsub error: %s" % result.error)
match = submit_expr.search(result.output)
if match:
result.has_failed = False
result.details["lsf_id"] = match.group(1)
result.details["lsf_queue"] = match.group(2)
else:
result.error = "Job info has unknown queue."
logger.warn(result.error)
return result