def _createPlot(self,
title,
xTitle,
yTitle,
md,
mdLabelX,
mdLabelY,
color='g',
figure=None):
xplotter = XmippPlotter(figure=figure)
xplotter.plot_title_fontsize = 11
xplotter.createSubPlot(title, xTitle, yTitle, 1, 1)
xplotter.plotMdFile(md, mdLabelX, mdLabelY, color)
return xplotter
def _createPlot(self,
title,
xTitle,
yTitle,
fnOutput,
mdLabelX,
mdLabelY,
color='g',
figure=None):
xplotter = XmippPlotter(figure=figure)
xplotter.plot_title_fontsize = 11
ax = xplotter.createSubPlot(title, xTitle, yTitle, 1, 1)
ax.set_yscale('log')
ax.set_xscale('log')
#plot noise and related errorbar
fnOutputN = self.protocol._defineResultsNoiseName()
md = xmipp.MetaData(fnOutputN)
xValueN = md.getColumnValues(xmipp.MDL_COUNT)
yValueN = md.getColumnValues(xmipp.MDL_AVG)
plt.plot(xValueN,
yValueN,
'--',
color='r',
label='Aligned gaussian noise')
# putting error bar
md = xmipp.MetaData(fnOutputN)
yErrN = md.getColumnValues(xmipp.MDL_STDDEV)
xValueNe = md.getColumnValues(xmipp.MDL_COUNT)
yValueNe = md.getColumnValues(xmipp.MDL_AVG)
plt.errorbar(xValueNe, yValueNe, yErrN, fmt='o', color='k')
#plot real data-set
fnOutput = self.protocol._defineResultsName()
md = xmipp.MetaData(fnOutput)
xValue = md.getColumnValues(xmipp.MDL_COUNT)
yValue = md.getColumnValues(xmipp.MDL_AVG)
plt.plot(xValue, yValue, color='g', label='Aligned particles')
# putting error bar
md = xmipp.MetaData(fnOutput)
yErr = md.getColumnValues(xmipp.MDL_STDDEV)
xValue = md.getColumnValues(xmipp.MDL_COUNT)
yValue = md.getColumnValues(xmipp.MDL_AVG)
plt.errorbar(xValue, yValue, yErr, fmt='o')
plt.legend(loc='upper right', fontsize=11)
return xplotter
def _createPlot(self, title, xTitle, yTitle, fnOutput, mdLabelX,
mdLabelY, color = 'g', figure=None):
xplotter = XmippPlotter(figure=figure)
xplotter.plot_title_fontsize = 11
ax=xplotter.createSubPlot(title, xTitle, yTitle, 1, 1)
ax.set_yscale('log')
ax.set_xscale('log')
#plot noise and related errorbar
fnOutputN = self.protocol._defineResultsNoiseName()
md = xmipp.MetaData(fnOutputN)
xValueN = md.getColumnValues(xmipp.MDL_COUNT)
yValueN = md.getColumnValues(xmipp.MDL_AVG)
plt.plot(xValueN, yValueN, '--', color='r',
label='Aligned gaussian noise')
# putting error bar
md = xmipp.MetaData(fnOutputN)
yErrN = md.getColumnValues(xmipp.MDL_STDDEV)
xValueNe = md.getColumnValues(xmipp.MDL_COUNT)
yValueNe = md.getColumnValues(xmipp.MDL_AVG)
plt.errorbar(xValueNe, yValueNe, yErrN, fmt='o', color='k')
#plot real data-set
fnOutput = self.protocol._defineResultsName()
md = xmipp.MetaData(fnOutput)
xValue = md.getColumnValues(xmipp.MDL_COUNT)
yValue = md.getColumnValues(xmipp.MDL_AVG)
plt.plot(xValue, yValue, color='g', label='Aligned particles')
# putting error bar
md = xmipp.MetaData(fnOutput)
yErr = md.getColumnValues(xmipp.MDL_STDDEV)
xValue = md.getColumnValues(xmipp.MDL_COUNT)
yValue = md.getColumnValues(xmipp.MDL_AVG)
plt.errorbar(xValue, yValue, yErr, fmt='o')
plt.legend(loc='upper right' , fontsize = 11)
return xplotter
def _createPlot(self, title, xTitle, yTitle, md, mdLabelX, mdLabelY, color='g', figure=None):
xplotter = XmippPlotter(figure=figure)
xplotter.plot_title_fontsize = 11
xplotter.createSubPlot(title, xTitle, yTitle, 1, 1)
xplotter.plotMdFile(md, mdLabelX, mdLabelY, color)
return xplotter
