def testOddsRatio(self): """Verify computation of Odds ratio effect size filter""" from plugins.samples.effectSizeFilters.OddsRatio import OddsRatio oddsRatio = OddsRatio(preferences) # Ground truth calculated by hand value = oddsRatio.run(table1[0], table1[1], table1[2], table1[3]) self.assertAlmostEqual(value, 2.0) value = oddsRatio.run(table2[0], table2[1], table2[2], table2[3]) self.assertAlmostEqual(value, 1.60483870968)
def testOddsRatio(self):
"""Verify computation of Odds ratio effect size filter"""
from plugins.samples.effectSizeFilters.OddsRatio import OddsRatio
oddsRatio = OddsRatio(preferences)
# Ground truth calculated by hand
value = oddsRatio.run(table1[0], table1[1], table1[2], table1[3])
self.assertAlmostEqual(value, 2.0)
value = oddsRatio.run(table2[0], table2[1], table2[2], table2[3])
self.assertAlmostEqual(value, 1.60483870968)
def testOddsRatio(self): """Verify computation of Odds ratio CI method""" from plugins.samples.confidenceIntervalMethods.OddsRatio import OddsRatio oddsRatio = OddsRatio(preferences) # Ground truth calculated by hand lowerCI, upperCI, effectSize, note = oddsRatio.run(table1[0], table1[1], table1[2], table1[3], 0.95) self.assertAlmostEqual(lowerCI, 0.676046021596) self.assertAlmostEqual(upperCI, 5.91675695474) self.assertAlmostEqual(effectSize, 2.0) lowerCI, upperCI, effectSize, note = oddsRatio.run(table2[0], table2[1], table2[2], table2[3], 0.95) self.assertAlmostEqual(lowerCI, 1.53926774059) self.assertAlmostEqual(upperCI, 1.6732029238) self.assertAlmostEqual(effectSize, 1.60483870968)
def testOddsRatio(self):
"""Verify computation of Odds ratio CI method"""
from plugins.samples.confidenceIntervalMethods.OddsRatio import OddsRatio
oddsRatio = OddsRatio(preferences)
# Ground truth calculated by hand
lowerCI, upperCI, effectSize, note = oddsRatio.run(
table1[0], table1[1], table1[2], table1[3], 0.95)
self.assertAlmostEqual(lowerCI, 0.676046021596)
self.assertAlmostEqual(upperCI, 5.91675695474)
self.assertAlmostEqual(effectSize, 2.0)
lowerCI, upperCI, effectSize, note = oddsRatio.run(
table2[0], table2[1], table2[2], table2[3], 0.95)
self.assertAlmostEqual(lowerCI, 1.53926774059)
self.assertAlmostEqual(upperCI, 1.6732029238)
self.assertAlmostEqual(effectSize, 1.60483870968)