def test_from_fhir_partOf(self):
# prepopulate database with parent organization
parent = Organization(id=101, name='fake parent reference')
with SessionScope(db):
db.session.add(parent)
db.session.commit()
parent = db.session.merge(parent)
parent_id = parent.id
with (open(
os.path.join(os.path.dirname(__file__),
'organization-example-f002-burgers-card.json'),
'r')) as fhir_data:
data = json.load(fhir_data)
# remove the id from the file - doesn't play well with ours
data.pop('id')
org = Organization.from_fhir(data)
assert org.addresses[0].line1 == data['address'][0]['line'][0]
assert org.name == data['name']
assert org.phone == "022-655 2320"
assert org.partOf_id == parent_id
# confirm we can store
with SessionScope(db):
db.session.add(org)
db.session.commit()
org = db.session.merge(org)
assert org.id
assert org.partOf_id == parent_id
def test_organization_get_by_identifier(self):
org_id_system = "http://test/system"
org_id_value = "testval"
self.login()
org = Organization(name='test', id=999)
ident = Identifier(id=99, system=org_id_system, value=org_id_value)
org_ident = OrganizationIdentifier(organization_id=999,
identifier_id=99)
with SessionScope(db):
db.session.add(org)
db.session.add(ident)
db.session.commit()
db.session.add(org_ident)
db.session.commit()
# use api to obtain FHIR
response = self.client.get(
'/api/organization?system={system}&value={value}'.format(
system=quote_plus(org_id_system), value=org_id_value))
assert response.status_code == 200
assert response.json['total'] == 1
assert response.json['entry'][0]['id'] == 999
# use alternative API to obtain organization
response = self.client.get(
'/api/organization/{value}?system={system}'.format(
system=quote_plus(org_id_system), value=org_id_value))
assert response.status_code == 200
fetched = Organization.from_fhir(response.json)
org = db.session.merge(org)
assert org.id == fetched.id
assert org.name == fetched.name
def test_from_fhir(self):
with open(
os.path.join(os.path.dirname(__file__),
'organization-example-f001-burgers.json'),
'r') as fhir_data:
data = json.load(fhir_data)
#prepopuate database with matching locale
Coding.from_fhir({
'code': 'en_AU',
'display': 'Australian English',
'system': "urn:ietf:bcp:47"
})
org = Organization.from_fhir(data)
self.assertEquals(org.addresses[0].line1,
data['address'][0]['line'][0])
self.assertEquals(org.addresses[1].line1,
data['address'][1]['line'][0])
self.assertEquals(org.name, data['name'])
self.assertEquals(org.phone, "022-655 2300")
self.assertTrue(org.use_specific_codings)
self.assertTrue(org.race_codings)
self.assertFalse(org.ethnicity_codings)
self.assertEquals(org.locales.count(), 1)
self.assertEquals(org.default_locale, "en_AU")
def test_from_fhir_partOf(self):
# prepopulate database with parent organization
parent = Organization(id=101, name='fake parent reference')
with SessionScope(db):
db.session.add(parent)
db.session.commit()
parent = db.session.merge(parent)
parent_id = parent.id
with (open(
os.path.join(
os.path.dirname(__file__),
'organization-example-f002-burgers-card.json'),
'r')
) as fhir_data:
data = json.load(fhir_data)
# remove the id from the file - doesn't play well with ours
data.pop('id')
org = Organization.from_fhir(data)
assert org.addresses[0].line1 == data['address'][0]['line'][0]
assert org.name == data['name']
assert org.phone == "022-655 2320"
assert org.partOf_id == parent_id
# confirm we can store
with SessionScope(db):
db.session.add(org)
db.session.commit()
org = db.session.merge(org)
assert org.id
assert org.partOf_id == parent_id
def test_organization_get_by_identifier(self):
org_id_system = "http://test/system"
org_id_value = "testval"
self.login()
org = Organization(name='test', id=999)
ident = Identifier(id=99, system=org_id_system, value=org_id_value)
org_ident = OrganizationIdentifier(
organization_id=999, identifier_id=99)
with SessionScope(db):
db.session.add(org)
db.session.add(ident)
db.session.commit()
db.session.add(org_ident)
db.session.commit()
# use api to obtain FHIR
response = self.client.get(
'/api/organization?system={system}&value={value}'.format(
system=quote_plus(org_id_system), value=org_id_value))
assert response.status_code == 200
assert response.json['total'] == 1
assert response.json['entry'][0]['id'] == 999
# use alternative API to obtain organization
response = self.client.get(
'/api/organization/{value}?system={system}'.format(
system=quote_plus(org_id_system), value=org_id_value))
assert response.status_code == 200
fetched = Organization.from_fhir(response.json)
org = db.session.merge(org)
assert org.id == fetched.id
assert org.name == fetched.name
def test_org_rp_reference(self):
rp = ResearchProtocol(name="test_rp")
with SessionScope(db):
db.session.add(rp)
db.session.commit()
rp = db.session.merge(rp)
org_data = {"name": "test_org",
"extension": [
{"url": TRUENTH_RP_EXTENSION,
"research_protocols": [{'name': "test_rp"}]}
]}
org = Organization.from_fhir(org_data)
self.assertEqual(1, len(org.research_protocols))
self.assertEqual(org.research_protocols[0].id, rp.id)
def test_org_rp_reference(self):
rp = ResearchProtocol(name="test_rp")
with SessionScope(db):
db.session.add(rp)
db.session.commit()
rp = db.session.merge(rp)
org_data = {"name": "test_org",
"extension": [
{"url": TRUENTH_RP_EXTENSION,
"research_protocols": [{'name': "test_rp"}]}
]}
org = Organization.from_fhir(org_data)
assert len(org.research_protocols) == 1
assert org.research_protocols[0].id == rp.id
def test_from_fhir(self):
with (open(
os.path.join(os.path.dirname(__file__),
'organization-example-f001-burgers.json'),
'r')) as fhir_data:
data = json.load(fhir_data)
# prepopulate database with matching locale
Coding.from_fhir({
'code': 'en_AU',
'display': 'Australian English',
'system': IETF_LANGUAGE_TAG
})
org = Organization.from_fhir(data)
assert org.addresses[0].line1 == data['address'][0]['line'][0]
assert org.addresses[1].line1 == data['address'][1]['line'][0]
assert org.name == data['name']
assert org.phone == "022-655 2300"
assert org.use_specific_codings
assert org.race_codings
assert not org.ethnicity_codings
assert org.locales.count() == 1
assert org.default_locale == "en_AU"
assert org._timezone == "US/Pacific"
def test_from_fhir(self):
with (open(
os.path.join(
os.path.dirname(__file__),
'organization-example-f001-burgers.json'),
'r')
) as fhir_data:
data = json.load(fhir_data)
# prepopulate database with matching locale
Coding.from_fhir(
{'code': 'en_AU', 'display': 'Australian English',
'system': IETF_LANGUAGE_TAG})
org = Organization.from_fhir(data)
assert org.addresses[0].line1 == data['address'][0]['line'][0]
assert org.addresses[1].line1 == data['address'][1]['line'][0]
assert org.name == data['name']
assert org.phone == "022-655 2300"
assert org.use_specific_codings
assert org.race_codings
assert not org.ethnicity_codings
assert org.locales.count() == 1
assert org.default_locale == "en_AU"
assert org._timezone == "US/Pacific"