def test_org_trigger_date(self):
# testing org-based QBs
org, rp, rp_id = self.setup_org_n_rp()
q = self.add_questionnaire(name='q')
q, org, self.test_user = map(db.session.merge,
(q, org, self.test_user))
qb = QuestionnaireBank(name='qb',
research_protocol_id=rp_id,
classification='baseline',
start='{"days": 1}',
expired='{"days": 2}')
qbq = QuestionnaireBankQuestionnaire(rank=0, questionnaire=q)
qb.questionnaires.append(qbq)
# user without consents or TX date should return None
self.assertFalse(qb.trigger_date(self.test_user))
# user with consent should return consent date
self.consent_with_org(org.id, setdate=now)
self.test_user = db.session.merge(self.test_user)
self.assertEqual(qb.trigger_date(self.test_user), now)
# user with consent and TX date should return TX date (if qb.recurs)
tx_date = datetime(2017, 6, 10, 20, 00, 00, 000000)
self.add_procedure(code='7',
display='Focal therapy',
system=ICHOM,
setdate=tx_date)
self.test_user = db.session.merge(self.test_user)
qb.__trigger_date = None # clear out stored trigger_date
recur = Recur(start='{"months": 3}',
cycle_length='{"months": 6}',
termination='{"months": 24}')
qb.recurs.append(recur)
self.assertEqual(qb.trigger_date(self.test_user), tx_date)
def test_intervention_trigger_date(self):
# testing intervention-based QBs
q = self.add_questionnaire('q')
interv = Intervention(name='interv', description='test')
with SessionScope(db):
db.session.add(interv)
db.session.commit()
q, interv, self.test_user = map(db.session.merge,
(q, interv, self.test_user))
qb = QuestionnaireBank(name='qb',
intervention_id=interv.id,
classification='baseline',
start='{"days": 1}',
expired='{"days": 2}')
qbq = QuestionnaireBankQuestionnaire(rank=0, questionnaire=q)
qb.questionnaires.append(qbq)
# user without biopsy or TX date should return None
self.assertFalse(qb.trigger_date(self.test_user))
# user with biopsy should return biopsy date
self.login()
self.test_user.save_observation(codeable_concept=CC.BIOPSY,
value_quantity=CC.TRUE_VALUE,
audit=Audit(user_id=TEST_USER_ID,
subject_id=TEST_USER_ID),
status='',
issued=None)
self.test_user = db.session.merge(self.test_user)
obs = self.test_user.observations.first()
self.assertEqual(obs.codeable_concept.codings[0].display, 'biopsy')
self.assertEqual(qb.trigger_date(self.test_user), obs.issued)
# user with biopsy and TX date should return TX date
tx_date = datetime.utcnow()
self.add_procedure(code='7',
display='Focal therapy',
system=ICHOM,
setdate=tx_date)
self.test_user = db.session.merge(self.test_user)
qb.__trigger_date = None # clear out stored trigger_date
self.assertEqual(qb.trigger_date(self.test_user), tx_date)
def test_intervention_in_progress(self):
# testing intervention-based QBs
q = self.add_questionnaire('q')
interv = Intervention(name='interv', description='test')
with SessionScope(db):
db.session.add(interv)
db.session.commit()
q, interv, self.test_user = map(db.session.merge,
(q, interv, self.test_user))
qb = QuestionnaireBank(name='qb',
intervention_id=interv.id,
classification='baseline',
start='{"days": 0}',
expired='{"days": 2}')
qbq = QuestionnaireBankQuestionnaire(rank=0, questionnaire=q)
qb.questionnaires.append(qbq)
# user with biopsy should return biopsy date
self.login()
self.test_user.save_observation(codeable_concept=CC.BIOPSY,
value_quantity=CC.TRUE_VALUE,
audit=Audit(user_id=TEST_USER_ID,
subject_id=TEST_USER_ID),
status='',
issued=None)
self.test_user = db.session.merge(self.test_user)
obs = self.test_user.observations.first()
self.assertEqual(obs.codeable_concept.codings[0].display, 'biopsy')
self.assertEqual(qb.trigger_date(self.test_user), obs.issued)
# add mock in-process QB - confirm most_current_qb still returns one
mock_qr('q', 'in-progress', qb=qb)
self.test_user, qb = map(db.session.merge, (self.test_user, qb))
self.assertEqual(
qb.most_current_qb(self.test_user,
as_of_date=now).questionnaire_bank, qb)