def test_hybrid_sampling(pipe):
n_walkers, p0, hybrid_lnpost = get_walkers(pipe, lnpost_fn=lnpost)
n_walkers *= 2
p0 = np.concatenate([p0, p0])
with pipe.worker_mode:
if pipe._is_controller:
sampler = EnsembleSampler(n_walkers, pipe._modellink._n_par,
hybrid_lnpost, args=[pipe])
sampler.run_mcmc(p0, 10)
def test_default(self, pipe):
if (pipe._size == 1):
with pytest.raises(RequestError):
get_walkers(pipe)
pipe.analyze()
get_walkers(pipe)
pipe.construct()
get_walkers(pipe, emul_i=1, unit_space=True)
def test_custom_lnpost(self, pipe):
get_walkers(pipe, lnpost_fn=lnpost)
def test_no_plausible_init_walkers(self, pipe):
with pytest.raises(e13.InputError):
get_walkers(pipe,
init_walkers=e13.lhd(1, pipe._modellink._n_par,
pipe._modellink._par_rng,
'center', pipe._criterion, 100))
def test_req_n_walkers(self, pipe):
if pipe._is_controller:
req_n_walkers = pipe._comm.bcast(pipe._n_impl_sam[-1]+1, 0)
else:
req_n_walkers = pipe._comm.bcast(None, 0)
get_walkers(pipe, req_n_walkers=req_n_walkers)
def test_init_walkers_size(self, pipe):
get_walkers(pipe, init_walkers=10)
def test_init_walkers_set(self, pipe):
get_walkers(pipe,
init_walkers=e13.lhd(10, pipe._modellink._n_par, None,
'center', pipe._criterion, 100),
unit_space=True)
def test_non_callable(self, pipe):
with pytest.raises(e13.InputError):
get_walkers(pipe, lnpost_fn=np.array(1))
def test_invalid_emulator(self, pipe):
pipe._emulator._emul_type = 'test'
with pytest.raises(e13.InputError):
get_walkers(pipe)
pipe._emulator._emul_type = 'default'
def test_no_Pipeline(self):
with pytest.raises(TypeError):
get_walkers(np.array(1))
