printlog(settings.program_description)
#Parse command line parameters
try:
settings.parse_command_line_args()
except Exception as inst:
printlog('!!! Error in command line parameters: !!!')
printlog(inst)
printlog('\nRun python ' + sys.argv[0] +
' --help for command line options information!')
sys.exit(-1)
parameters = settings.parameters
if parameters['logfile'] != '':
start_log(
parameters['logfile'],
overwrite_existing=(parameters['overwrite_logfile'] == 'yes'),
verbosity_level=parameters['verbose'])
printlog(settings.program_description, print_enabled=False)
printlog('Started on %s ...' % (time.strftime("%a, %d %b %Y at %H:%M:%S")))
printlog(settings.format_parameters())
import_metadata(settings.parameters)
printlog('\nFinished on %s in' %
(time.strftime("%a, %d %b %Y at %H:%M:%S")))
toc()
#
printlog(settings.description_epilog)
stop_log()
tic();
settings=OptionsHolder(__doc__, InternalAlign_options);
settings.description='Profile Alignment';
settings.do='yes';
printlog(settings.program_description);
try:
settings.parse_command_line_args()
except Exception as inst:
printlog('!!! Error in command line parameters: !!!');
printlog(inst);
printlog('\nRun python ' + sys.argv[0] + ' --help for command line options information!');
sys.exit(-1)
parameters = settings.parameters;
if parameters['logfile'] != '':
start_log(parameters['logfile'], overwrite_existing = (parameters['overwrite_logfile'] == 'yes'), verbosity_level = parameters['verbose']);
printlog(settings.program_description, print_enabled = False);
printlog('Started on %s ...'%(time.strftime("%a, %d %b %Y at %H:%M:%S")));
printlog(settings.format_parameters());
do_profile_alignment(settings.parameters['dbfilename'],\
method = settings.parameters['method'], \
params = settings.parameters['params'])
printlog('\nFinished on %s in'%(time.strftime("%a, %d %b %Y at %H:%M:%S")));
toc();
printlog(settings.description_epilog);
stop_log();
