import os
import time
import datetime
import glob
import zipfile
import prody as pd
from prody import LOGGER
import rhapsody as rd
import protocols
DEBUG_MODE = False
LOGGER._setprefix('')
LOGGER.info(f'Started on {datetime.datetime.now()}')
LOGGER.info('')
# set PDB folder
old_verbosity = LOGGER.verbosity
LOGGER._setverbosity('none')
home_dir = os.environ['HOME']
pdb_dir = os.path.join(home_dir, 'PDBs')
if not os.path.isdir(pdb_dir):
os.mkdir(pdb_dir)
pd.pathPDBFolder(pdb_dir)
LOGGER._setverbosity(old_verbosity)
# check Rhapsody installation
rd.initialSetup()
if DEBUG_MODE:
time.sleep(5)
