def test_sio_magic_success_with_wd(self):
options = {}
dir_path = os.path.join('data_files', 'Measurement_Import',
'sio_magic')
options['mag_file'] = os.path.join('sio_af_example.dat')
options['meas_file'] = os.path.join('sio_af_example.magic')
options['dir_path'] = dir_path
program_ran, file_name = sio_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.realpath(file_name),
os.path.realpath(os.path.join(dir_path, options['meas_file'])))
def test_sio_magic_fail_with_coil(self):
options = {}
options['mag_file'] = os.path.join(WD, 'data_files',
'Measurement_Import', 'sio_magic',
'sio_af_example.dat')
meas_file = os.path.join(WD, 'data_files', 'Measurement_Import',
'sio_magic', 'sio_af_example.magic')
options['meas_file'] = meas_file
options['coil'] = 4
program_ran, error_message = sio_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, '4 is not a valid coil specification')
def test_sio_magic_succeed_option4(self):
options = {}
options['mag_file'] = os.path.join(WD, 'data_files',
'Measurement_Import', 'sio_magic',
'sio_af_example.dat')
meas_file = os.path.join(WD, 'data_files', 'Measurement_Import',
'sio_magic', 'sio_af_example.magic')
options['meas_file'] = meas_file
options['samp_con'] = '4-2'
program_ran, file_name = sio_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(file_name, meas_file)
def test_sio_magic_fail_option4(self):
options = {}
options['mag_file'] = os.path.join(WD, 'data_files',
'Measurement_Import', 'sio_magic',
'sio_af_example.dat')
meas_file = os.path.join(WD, 'data_files', 'Measurement_Import',
'sio_magic', 'sio_af_example.magic')
options['meas_file'] = meas_file
options['samp_con'] = '4'
program_ran, error_message = sio_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, "naming convention option [4] must be in form 4-Z where Z is an integer")
def test_sio_magic_fail_with_coil(self):
options = {}
options['mag_file'] = os.path.join(WD, 'data_files',
'Measurement_Import', 'sio_magic',
'sio_af_example.dat')
meas_file = os.path.join(WD, 'data_files', 'Measurement_Import',
'sio_magic', 'sio_af_example.magic')
options['meas_file'] = meas_file
options['coil'] = 4
program_ran, error_message = sio_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(error_message, '4 is not a valid coil specification')
def test_sio_magic_succeed_option4(self):
options = {}
options['mag_file'] = os.path.join(WD, 'data_files',
'Measurement_Import', 'sio_magic',
'sio_af_example.dat')
meas_file = os.path.join(WD, 'data_files', 'Measurement_Import',
'sio_magic', 'sio_af_example.magic')
options['meas_file'] = meas_file
options['samp_con'] = '4-2'
program_ran, file_name = sio_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(file_name, meas_file)
def test_sio_magic_success_with_wd(self):
options = {}
dir_path = os.path.join('data_files', 'Measurement_Import',
'sio_magic')
options['mag_file'] = os.path.join('sio_af_example.dat')
options['meas_file'] = os.path.join('sio_af_example.magic')
options['dir_path'] = dir_path
program_ran, file_name = sio_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(
os.path.realpath(file_name),
os.path.realpath(os.path.join(dir_path, options['meas_file'])))
def test_sio_magic_success(self):
options = {}
dir_path = os.path.join('data_files', 'Measurement_Import',
'sio_magic')
options['mag_file'] = os.path.join(dir_path, 'sio_af_example.dat')
options['meas_file'] = os.path.join(dir_path, 'sio_af_example.magic')
program_ran, file_name = sio_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.realpath(file_name),
os.path.realpath(options['meas_file']))
meas_df = nb.MagicDataFrame(options['meas_file'])
self.assertIn('sequence', meas_df.df.columns)
self.assertEqual(0, meas_df.df.iloc[0]['sequence'])
def test_sio_magic_success(self):
options = {}
dir_path = os.path.join('data_files', 'Measurement_Import',
'sio_magic')
options['mag_file'] = os.path.join(dir_path, 'sio_af_example.dat')
options['meas_file'] = os.path.join(dir_path, 'sio_af_example.magic')
program_ran, file_name = sio_magic.convert(**options)
self.assertTrue(program_ran)
self.assertEqual(os.path.realpath(file_name),
os.path.realpath(options['meas_file']))
meas_df = nb.MagicDataFrame(options['meas_file'])
self.assertIn('sequence', meas_df.df.columns)
self.assertEqual(0, meas_df.df.iloc[0]['sequence'])
def test_sio_magic_fail_option4(self):
options = {}
options['mag_file'] = os.path.join(WD, 'data_files',
'Measurement_Import', 'sio_magic',
'sio_af_example.dat')
meas_file = os.path.join(WD, 'data_files', 'Measurement_Import',
'sio_magic', 'sio_af_example.magic')
options['meas_file'] = meas_file
options['samp_con'] = '4'
program_ran, error_message = sio_magic.convert(**options)
self.assertFalse(program_ran)
self.assertEqual(
error_message,
"naming convention option [4] must be in form 4-Z where Z is an integer"
)
def test_sio_magic_no_files(self):
program_ran, error_message = sio_magic.convert()
self.assertFalse(program_ran)
self.assertEqual(error_message, 'mag_file field is required option')
def test_sio_magic_no_files(self):
program_ran, error_message = sio_magic.convert()
self.assertFalse(program_ran)
self.assertEqual(error_message, 'mag_file field is required option')