def calc_step(): print 'Calcualting steps' truncated.find_solutions(model,scaling=False)
def calc_step(): print 'CALCULATING STEPS' truncated.find_solutions(model,scaling=False)
import project_tools import project_tools.parameter_fitting.FRET.compute_Jacobian as compute import model_builder as mdb import numpy as np model, fitopts = mdb.inputs.load_model('1PB7',dry_run=True) def_FRET_pairs = [[219, 371]] defspacing = 0.1 sim_feature, sim_feature_err, Jacobian, Jacobian_err = compute.calculate_average_Jacobian(model,fitopts, FRET_pairs=def_FRET_pairs, spacing=defspacing) target_feature, target_feature_err = compute.get_target_feature(model, fitopts) np.savetxt('target_feature.dat',target_feature) np.savetxt('sim_feature.dat',sim_feature) np.savetxt('Jacobian.dat', Jacobian) import project_tools.parameter_fitting.newton_solver.Truncated_SVD as truncated truncated.find_solutions(model,scaling=False)