def showWarnings(warningList, notConfirm=False):
'''Function to write error message to log, to screen and exit'''
if not warningList or len(warningList) == 0:
return True
for warning in warningList:
from protlib_xmipp import warnStr
print >> sys.stderr, warnStr("WARNING: %s"% warning)
if notConfirm:
return True
answer = raw_input('Do you want to proceed? [y/N]:')
if not answer or answer.lower() == 'n':
return False
return True
def runProgramTests(self, program):
tests = self.progDict[program]
n = len(tests)
outPath = join(self.fnDir, program)
outDir = outPath
testName = ""
testNo = 1
md = MetaData(self._statistics)
for test, mpi, random, preruns, postruns, changeDirectory, testfiles, owner in tests:
# for test, mpi, random, preruns, postruns, changeDirectory, testfiles in tests:
objid = md.addObject()
if n > 1:
outDir = outPath + "_%02d" % testNo
testName = "(%d of %d)" % (testNo, n)
# test num
md.setValue(MDL_BLOCK_NUMBER, testNo, objid)
# program name
# print type(program)
md.setValue(MDL_PROGRAM, str(program), objid)
dtBegin = datetime.now()
timeStr = str(dtBegin)
# beginning time
md.setValue(MDL_DATE, str(timeStr), objid)
print "------------------------------------------------------------------------------------"
print warnStr(">>> Running test %(testName)s of %(program)s (%(timeStr)s)" % locals())
print " Output dir: "
print " ", outDir
print " Statistics file: "
print " ", self._statistics
print " Timeout: "
print " %d seconds" % self._timeout
if exists(outDir):
shutil.rmtree(outDir)
os.makedirs(outDir)
self.outDir = outDir
self.program = program
test = self.expandFormat(test)
self.runCommands(preruns, "prerun")
if mpi:
cmd = (
"mpirun -np 3 `which %s`" % program
) ##DO NOT REPLACE SO WE CAN TEST MPI EASILY.replace("xmipp_", "xmipp_mpi_")
else:
cmd = program
if changeDirectory:
cmd = "cd %s ; " % outDir + cmd + " %s > stdout.txt 2> stderr.txt" % test
else:
cmd += " %s > %s/stdout.txt 2> %s/stderr.txt" % (test, outDir, outDir)
print " Command: "
print " ", greenStr(cmd)
# run the test itself
command = Command(cmd)
self._command = command
try:
command.run(timeout=self._timeout)
except KeyboardInterrupt:
command.terminate()
# result = os.system(cmd)
# result = subprocess.call(cmd, shell=True)
self.runCommands(postruns, "postrun")
tdEnd = (datetime.now() - dtBegin).total_seconds()
# elapsed time
md.setValue(MDL_TIME, tdEnd, objid)
print " Elapsed time: %d seconds" % tdEnd
error = self.checkResult(testfiles, outDir, random)
if len(error):
self.error += error
self.errorFlag = True
print redStr("ERRORS:\n" + error)
md.setValue(MDL_ENABLED, -1, objid)
else:
md.setValue(MDL_ENABLED, 1, objid)
testNo += 1
md.setValue(MDL_USER, str(owner), objid)
md.write(self._statistics)
