def test_tax_ids_info_several_ids_list():
expected = [
{
"taxonomyId": 9606,
"mnemonic": "HUMAN",
"scientificName": "H**o sapiens",
"commonName": "Human",
"rank": "species",
"parentLink": "https://www.ebi.ac.uk/proteins/api/taxonomy/id/9605",
"childrenLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/741158",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/63221"
],
"siblingsLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1425170"
]
},
{
"taxonomyId": 3202,
"mnemonic": "9MARC",
"scientificName": "Jungermannia",
"rank": "genus",
"parentLink": "https://www.ebi.ac.uk/proteins/api/taxonomy/id/3201",
"childrenLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/402631",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/37392",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/402630",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1670782",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1670783",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1670784",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/350782",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/588650",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/588651",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1112838",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/362817",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/362816",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/463576",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/362815",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/362814",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/248332",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/746483",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/280831",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/746484",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/746485",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/280830",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/746486",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/3203"
],
"siblingsLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/402090",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/53014",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/209812",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1331044",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1867305",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/984532",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/306424",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/209808",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1527784",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/463570",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/248327"
]
},
{
"taxonomyId": 176652,
"mnemonic": "IIV6",
"scientificName": "Invertebrate iridescent virus 6",
"commonName": "IIV-6",
"synonym": "Chilo iridescent virus",
"rank": "species",
"parentLink": "https://www.ebi.ac.uk/proteins/api/taxonomy/id/10487",
"childrenLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/132417"
],
"siblingsLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/327984",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/176651"
]
},
{
"taxonomyId": 10090,
"mnemonic": "MOUSE",
"scientificName": "Mus musculus",
"commonName": "Mouse",
"rank": "species",
"parentLink": "https://www.ebi.ac.uk/proteins/api/taxonomy/id/862507",
"childrenLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/477815",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/477816",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/179238",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/35531",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1879032",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10091",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10092",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/57486",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/39442",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/947985",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1266728",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1643390",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/80274",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/46456",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/116058",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/1385377"
],
"siblingsLinks": [
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10096",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10097",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10098",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10100",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10089",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/473865",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/254704",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/186842",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/10103",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/186193",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/27681",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/481680",
"https://www.ebi.ac.uk/proteins/api/taxonomy/id/83773"
]
}
]
actual = up.get_info_on_taxIDs([9606,3202,176652,10090])
for tax in zip(expected, list(actual.iter_nodes())):
for k, v in tax[0].items():
assert tax[1][k] == v
def test_get_info_on_taxIDs_invalid_taxid():
with pytest.raises(NoDataError):
r = up.get_info_on_taxIDs(['8UGH5'])
def test_get_info_on_taxIDs_nonexisting_taxid():
with pytest.raises(NoDataError):
r = up.get_info_on_taxIDs([960600000])
def test_get_info_on_taxIDs_string_input():
with pytest.raises(ValueError):
r = up.get_info_on_taxIDs('9606,10090')