def setFailed(self, errorMsg):
for child in self.childs:
if child.isRunning() or child.isScheduled():
#child.setFailed(errorMsg)
self.getProject().stopProtocol(child)
EMProtocol.setFailed(self, errorMsg)
def setAborted(self):
for child in self.childs:
if child.isRunning() or child.isScheduled():
#child.setAborted()
self.getProject().stopProtocol(child)
EMProtocol.setAborted(self)
def __init__(self, **args):
EMProtocol.__init__(self, **args)
self.bFactor = 4 # Info from Relion wiki
self.tsExpandedList = []
self.initialized = False
self._doseFromMdoc = None
self.ctfMRCFileList = []
self.ctfStarFileList = []
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
# We need to trace the changes of 'inputType' to
# dynamically modify the property of pointerClass
# of the 'inputSets' parameter
def onChangeInputType():
inputText = self.getEnumText('inputType')
pointerClass = 'SetOf' + inputText
self.getParam('inputSet').setPointerClass(pointerClass)
self.inputType.trace(onChangeInputType)
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
self.stepsExecutionMode = STEPS_PARALLEL
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
self._runIds = pwobj.CsvList(pType=int)
self.childs = []
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
self.dictObj = OrderedDict()
self.stepsExecutionMode = STEPS_PARALLEL
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
self.stepsExecutionMode = STEPS_PARALLEL
self.usePowerSpectra = False
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
self.workflowDicts = []
self.entryAuthorStr = ""
self.workflowPath = String()
self.depositionJsonPath = String()
def __init__(self, **args):
EMProtocol.__init__(self, **args)
self.tomoname_list = []
self.targetname_list = []
def __init__(self, **args):
EMProtocol.__init__(self, **args)
ProtTomoBase.__init__(self)
self.stepsExecutionMode = STEPS_PARALLEL
def __init__(self, **args):
EMProtocol.__init__(self, **args)
self.SYMMETRY = Boolean(True)
def __init__(self, **kwargs):
EMProtocol.__init__(self, **kwargs)
self._objectsToGo = Integer()
self._provider = None
self._tomoList = None
