def loadSetFromDb(dbName, dbPrefix=''):
from pwem import Domain
from pyworkflow.mapper.sqlite import SqliteFlatDb
db = SqliteFlatDb(dbName=dbName, tablePrefix=dbPrefix)
setClassName = db.getProperty('self') # get the set class name
setObj = Domain.getObjects()[setClassName](filename=dbName,
prefix=dbPrefix)
return setObj
def _loadSet(self, dbName, dbPreffix):
from pyworkflow.mapper.sqlite import SqliteFlatDb
db = SqliteFlatDb(dbName=dbName, tablePrefix=dbPreffix)
if dbPreffix:
setClassName = "SetOf%ss" % db.getSelfClassName()
else:
setClassName = db.getProperty('self') # get the set class name
# FIXME: Check why the import is here
from pwem import Domain
setObj = Domain.getObjects()[setClassName](filename=dbName, prefix=dbPreffix)
return setObj
def test_plugin(self):
# Really stupid test to check that tomo plugin is defined
tomo = Domain.getPlugin('tomo')
self.assertFalse(tomo is None)
self.assertTrue(hasattr(tomo, 'Plugin'))
# Check that defined objects here are found
objects = Domain.getObjects()
expected = [
'TiltImage', 'TiltSeries', 'SetOfTiltSeries', 'TiltImageM',
'TiltSeriesM', 'SetOfTiltSeriesM'
]
for e in expected:
self.assertTrue(e in objects,
"%s should be in Domain.getObjects" % e)
return ''
n = len(sys.argv)
if n > 4:
usage("Incorrect number of input parameters")
if n == 1: # List all plugins
plugins = Domain.getPlugins()
print("Plugins:")
for k, v in iteritems(plugins):
print("-", k)
print("Objects")
pwutils.prettyDict(Domain.getObjects())
print("Protocols")
pwutils.prettyDict(Domain.getProtocols())
print("Viewers")
pwutils.prettyDict(Domain.getViewers())
elif n == 2:
if sys.argv[1] in ['-h', '--help', 'help']:
usage()
pluginName = sys.argv[1]
plugin = Domain.getPlugin(pluginName)
print("Plugin: %s" % pluginName)
for subName in [