def test_ens2sym(self):
client=SmartClient()
id_types=['gene_ensembl','gene_symbol']
key='2'.join(id_types)
cache_path=client._get_cache_path(id_types)
client.load(id_types)
self.assertTrue(os.path.exists(cache_path)) # newly created
self.assertIn(key, client.tables, 'no %s in tables' % key)
ens2sym=client.get_map(*id_types)
self.assertEqual(ens2sym['ENSG00000011021'],'CLCN6')
def get_output_map(output_type):
client=SmartClient()
client.load(['gene_known',output_type])
return client.get_map('gene_known', output_type)
