def gaitDescriptiveKinematicPlotPanel(cls):
# ----DATA-----
DATA_PATH = pyCGM2.TEST_DATA_PATH+"operations\\plot\\gaitPlot\\"
modelledFilenames = ["gait Trial 03 - viconName.c3d"]
#---- c3d manager
#--------------------------------------------------------------------------
c3dmanagerProcedure = c3dManager.UniqueC3dSetProcedure(DATA_PATH,modelledFilenames)
cmf = c3dManager.C3dManagerFilter(c3dmanagerProcedure)
cmf.enableEmg(False)
trialManager = cmf.generate()
#---- Analysis
#--------------------------------------------------------------------------
modelInfo=None
subjectInfo=None
experimentalInfo=None
analysisInstance = analysis.makeAnalysis("Gait", "CGM1.0", DATA_PATH,modelledFilenames,None, None, None)
# viewer
kv = plotViewers.LowerLimbKinematicsPlotViewer(analysisInstance)
kv.setConcretePlotFunction(plot.gaitDescriptivePlot)
kv.setNormativeDataset(normativeDatasets.Schwartz2008("Free"))
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.plot()
plt.show()
def gaitDescriptiveKinematicPlotPanel(cls):
# ----DATA-----
DATA_PATH = pyCGM2.TEST_DATA_PATH+"operations\\plot\\gaitPlot\\"
modelledFilenames = ["gait Trial 03 - viconName.c3d"]
#---- c3d manager
#--------------------------------------------------------------------------
c3dmanagerProcedure = c3dManager.UniqueC3dSetProcedure(DATA_PATH,modelledFilenames)
cmf = c3dManager.C3dManagerFilter(c3dmanagerProcedure)
cmf.enableEmg(False)
trialManager = cmf.generate()
#---- Analysis
#--------------------------------------------------------------------------
modelInfo=None
subjectInfo=None
experimentalInfo=None
analysis = gaitSmartFunctions.make_analysis(trialManager,
cgm.CGM1LowerLimbs.ANALYSIS_KINEMATIC_LABELS_DICT,
cgm.CGM1LowerLimbs.ANALYSIS_KINETIC_LABELS_DICT,
modelInfo,subjectInfo,experimentalInfo)
# viewer
kv = plotViewers.LowerLimbKinematicsPlotViewer(analysis)
kv.setConcretePlotFunction(plot.gaitDescriptivePlot)
kv.setNormativeDataset(normativeDatasets.Schwartz2008("Free"))
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.plot()
ka = annotator.Annotator(pf.fig)
ka.IncreasedRange(0,40,10,40, "Context", timing="Throughout Cycle")
print(ka.getAnnotations())
plt.show()
def gaitDescriptiveKinematicPlotPanel_recorded(cls):
# ----DATA-----
DATA_PATH = pyCGM2.TEST_DATA_PATH+"operations\\plot\\gaitPlot\\"
modelledFilenames = ["gait Trial 03 - viconName.c3d"]
#---- c3d manager
#--------------------------------------------------------------------------
c3dmanagerProcedure = c3dManager.UniqueC3dSetProcedure(DATA_PATH,modelledFilenames)
cmf = c3dManager.C3dManagerFilter(c3dmanagerProcedure)
cmf.enableEmg(False)
trialManager = cmf.generate()
#---- Analysis
#--------------------------------------------------------------------------
modelInfo=None
subjectInfo=None
experimentalInfo=None
analysis = gaitSmartFunctions.make_analysis(trialManager,
cgm.CGM1LowerLimbs.ANALYSIS_KINEMATIC_LABELS_DICT,
cgm.CGM1LowerLimbs.ANALYSIS_KINETIC_LABELS_DICT,
modelInfo,subjectInfo,experimentalInfo)
# viewer
kv = plotViewers.LowerLimbKinematicsPlotViewer(analysis)
kv.setConcretePlotFunction(plot.gaitDescriptivePlot)
kv.setNormativeDataset(normativeDatasets.Schwartz2008("Free"))
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport("C:\\Users\\HLS501\\Desktop\\","test","png")
pf.plot()
plt.show()
def cgm_gaitPlots(modelVersion,
analysis,
kineticFlag,
outputPath,
pdfFilename,
pointLabelSuffix="",
normativeDataset=None):
# filter 0 - stp panel
#-------------------------------------------
# pstViewer
stpv = plotViewers.SpatioTemporalPlotViewer(analysis)
stpv.setNormativeDataset(normativeDatasets.NormalSTP())
# filter
stppf = plotFilters.PlottingFilter()
stppf.setViewer(stpv)
stppf.setExport(outputPath, str(pdfFilename + "-stp"), "pdf")
stppf.plot()
# filter 1 - descriptive kinematic panel
#-------------------------------------------
# viewer
if modelVersion in [
"CGM1.0", "CGM1.1", "CGM2.1", "CGM2.2", "CGM2.2e", "CGM2.3",
"CGM2.3e"
]:
kv = plotViewers.LowerLimbKinematicsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix)
elif modelVersion in ["CGM2.4", "CGM2.4e"]:
kv = plotViewers.LowerLimbMultiFootKinematicsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix)
else:
raise Exception("[pyCGM2] Model version not known")
kv.setConcretePlotFunction(plot.gaitDescriptivePlot)
if normativeDataset is not None:
kv.setNormativeDataset(normativeDataset)
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport(outputPath, str(pdfFilename + "-descriptive Kinematics"),
"pdf")
pf.plot()
# filter 2 - consistency kinematic panel
#-------------------------------------------
# viewer
if modelVersion in [
"CGM1.0", "CGM1.1", "CGM2.1", "CGM2.2", "CGM2.2e", "CGM2.3",
"CGM2.3e"
]:
kv = plotViewers.LowerLimbKinematicsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix)
elif modelVersion in ["CGM2.4", "CGM2.4e"]:
kv = plotViewers.LowerLimbMultiFootKinematicsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix)
else:
raise Exception("[pyCGM2] Model version not known")
kv.setConcretePlotFunction(plot.gaitConsistencyPlot)
if normativeDataset is not None:
kv.setNormativeDataset(normativeDataset)
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport(outputPath, str(pdfFilename + "-consistency Kinematics"),
"pdf")
pf.plot()
if kineticFlag:
# filter 1 - descriptive kinematic panel
#-------------------------------------------
# viewer
if modelVersion in [
"CGM1.0", "CGM1.1", "CGM2.1", "CGM2.2", "CGM2.2e", "CGM2.3",
"CGM2.3e", "CGM2.4", "CGM2.4e"
]:
kv = plotViewers.LowerLimbKineticsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix)
kv.setConcretePlotFunction(plot.gaitDescriptivePlot)
if normativeDataset is not None:
kv.setNormativeDataset(normativeDataset)
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport(outputPath, str(pdfFilename + "-descriptive Kinetics"),
"pdf")
pf.plot()
# filter 2 - consistency kinematic panel
#-------------------------------------------
# viewer
if modelVersion in [
"CGM1.0", "CGM1.1", "CGM2.1", "CGM2.2", "CGM2.2e", "CGM2.3",
"CGM2.3e", "CGM2.4", "CGM2.4e"
]:
kv = plotViewers.LowerLimbKineticsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix)
kv.setConcretePlotFunction(plot.gaitConsistencyPlot)
if normativeDataset is not None:
kv.setNormativeDataset(normativeDataset)
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport(outputPath, str(pdfFilename + "-consistency Kinetics"),
"pdf")
pf.plot()