def AI_func():
from pyFAI.detectors import Pilatus2M
from pyFAI import AzimuthalIntegrator, units
return AzimuthalIntegrator(
0.283, 5.24e-3, 4.085e-3, 0, 0, 0, 1.72e-4, 1.72e-4, detector=Pilatus2M(), wavelength=1.23984e-10
)
def test_SAXSWorkflow():
# create processes
thresholdmask = ThresholdMaskPlugin()
qintegrate = QIntegratePlugin()
# set values
AI = AzimuthalIntegrator(.283,
5.24e-3,
4.085e-3,
0,
0,
0,
1.72e-4,
1.72e-4,
detector=Pilatus2M(),
wavelength=1.23984e-10)
thresholdmask.data.value = fabio.open(
'/Users/hari/Downloads/AGB_5S_USE_2_2m.edf').data
def AI_func():
from pyFAI.detectors import Pilatus2M
from pyFAI import AzimuthalIntegrator, units
return AzimuthalIntegrator(.283,
5.24e-3,
4.085e-3,
0,
0,
0,
1.72e-4,
1.72e-4,
detector=Pilatus2M(),
wavelength=1.23984e-10)
qintegrate.integrator.value = AI_func
qintegrate.npt.value = 1000
thresholdmask.minimum.value = 30
thresholdmask.maximum.value = 1e12
qintegrate.data.value = fabio.open(
'/Users/hari/Downloads/AGB_5S_USE_2_2m.edf').data
thresholdmask.neighborhood.value = 1
qintegrate.normalization_factor.value = 0.5
qintegrate.method.value = "numpy"
# connect processes
thresholdmask.mask.connect(qintegrate.mask)
# add processes to workflow
wf = Workflow('QIntegrate')
wf.addProcess(thresholdmask)
wf.addProcess(qintegrate)
dsk = DaskExecutor()
result = dsk.execute(wf)
print(result)
def test_autoconnect():
# create processes
thresholdmask = ThresholdMaskPlugin()
qintegrate = QIntegratePlugin()
# set values
AI = AzimuthalIntegrator(
0.283, 5.24e-3, 4.085e-3, 0, 0, 0, 1.72e-4, 1.72e-4, detector=Pilatus2M(), wavelength=1.23984e-10
)
thresholdmask.data.value = fabio.open("/Users/hari/Downloads/AGB_5S_USE_2_2m.edf").data
qintegrate.integrator.value = AI
qintegrate.npt.value = 1000
thresholdmask.minimum.value = 30
thresholdmask.maximum.value = 1e12
def test_Detector_pickle():
import cloudpickle
import numpy as np
from pyFAI.detectors import Pilatus2M
det = Pilatus2M()
print(det, type(det))
# print(det.__reduce__())
# print(det.__getnewargs_ex__())
# print(det.__getstate__())
assert dumps(det)
assert loads(dumps(det))
assert loads(dumps(det)).shape == (1679, 1475)