def getSessionResourceMeta(self):
global getHCP
getHCP.Resource = str(self.resourcesListWidget.currentItem().text())
ResourceMeta = getHCP.getSubjectResourceMeta()
# 'Name', 'Bytes', 'URI', 'Path', 'Readable', 'RealPath', 'Label', 'Format', 'Contents'
Names = ResourceMeta.get('Name')
Bytes = ResourceMeta.get('Bytes')
URIs = ResourceMeta.get('URI')
self.sessionMetaTableWidget.clearSpans()
self.sessionMetaTableWidget.setRowCount(0)
self.sessionMetaTableWidget.setHorizontalHeaderItem(
0, QtGui.QTableWidgetItem('File Name'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(
1, QtGui.QTableWidgetItem('Bytes'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(
2, QtGui.QTableWidgetItem('URI'))
for i in xrange(0, len(Names)):
self.sessionMetaTableWidget.removeRow(i)
self.sessionMetaTableWidget.insertRow(i)
self.sessionMetaTableWidget.setItem(
i, 0, QtGui.QTableWidgetItem(Names[i]))
self.sessionMetaTableWidget.setItem(
i, 1, QtGui.QTableWidgetItem(Bytes[i]))
self.sessionMetaTableWidget.setItem(
i, 2, QtGui.QTableWidgetItem(URIs[i]))
def getSessionResourceMeta(self):
global getHCP
getHCP.Resource = str(self.resourcesListWidget.currentItem().text())
ResourceMeta = getHCP.getSubjectResourceMeta()
# 'Name', 'Bytes', 'URI', 'Path', 'Readable', 'RealPath', 'Label', 'Format', 'Contents'
Names = ResourceMeta.get('Name')
Bytes = ResourceMeta.get('Bytes')
URIs = ResourceMeta.get('URI')
self.sessionMetaTableWidget.clearSpans()
self.sessionMetaTableWidget.setRowCount(0)
self.sessionMetaTableWidget.setHorizontalHeaderItem(0, QtGui.QTableWidgetItem('File Name'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(1, QtGui.QTableWidgetItem('Bytes'))
self.sessionMetaTableWidget.setHorizontalHeaderItem(2, QtGui.QTableWidgetItem('URI'))
for i in xrange(0, len(Names)):
self.sessionMetaTableWidget.removeRow(i)
self.sessionMetaTableWidget.insertRow(i)
self.sessionMetaTableWidget.setItem(i, 0, QtGui.QTableWidgetItem(Names[i]))
self.sessionMetaTableWidget.setItem(i, 1, QtGui.QTableWidgetItem(Bytes[i]))
self.sessionMetaTableWidget.setItem(i, 2, QtGui.QTableWidgetItem(URIs[i]))
OutputFileName = list()
OutputFileURIName = list()
OutputFilePathName = list()
if (Resource is not None):
#===========================================================================
# check for session on input, if not present do the full Resources call, this is a resource hog...
#===========================================================================
if (getHCP.Session == None):
SubjectResourcesMeta = getHCP.getSubjectResourcesMeta()
getHCP.Session = SubjectResourcesMeta.get('Session')[SubjectResourcesMeta.get('Label').index(Resource)]
if (Resource in SubjectResourcesMeta.get('Label')):
getHCP.Resource = Resource
ResourceMeta = getHCP.getSubjectResourceMeta()
else:
print 'ERROR: %s not in %s resources.' % (Resource, Subject)
sys.exit()
else:
getHCP.Resource = Resource
ResourceMeta = getHCP.getSubjectResourceMeta()
for i in xrange(0, len(ResourceMeta.get('Path'))):
#=======================================================================
# if entire RESOURCE is requested...
#=======================================================================
if (Files == None):
OutputFileName = list()
OutputFileURIName = list()
OutputFilePathName = list()
if (Resource is not None):
#===========================================================================
# check for session on input, if not present do the full Resources call, this is a resource hog...
#===========================================================================
if (getHCP.Session == None):
SubjectResourcesMeta = getHCP.getSubjectResourcesMeta()
getHCP.Session = SubjectResourcesMeta.get('Session')[
SubjectResourcesMeta.get('Label').index(Resource)]
if (Resource in SubjectResourcesMeta.get('Label')):
getHCP.Resource = Resource
ResourceMeta = getHCP.getSubjectResourceMeta()
else:
print 'ERROR: %s not in %s resources.' % (Resource, Subject)
sys.exit()
else:
getHCP.Resource = Resource
ResourceMeta = getHCP.getSubjectResourceMeta()
for i in xrange(0, len(ResourceMeta.get('Path'))):
#=======================================================================
# if entire RESOURCE is requested...
#=======================================================================
if (Files == None):
print SubmitStr
if Launch:
# os.system(SubmitStr)
subprocess.call(SubmitStr, shell=True)
#=======================================================================
# StructuralHCP
#=======================================================================
elif (Pipeline == 'StructuralHCP'):
PathMatch = list()
ScanIdList = list()
StructResources = ['T1w_MPR1_unproc', 'T1w_MPR2_unproc', 'T2w_SPC1_unproc', 'T2w_SPC2_unproc']
getHCP.Resource = StructResources[0]
resourceMeta = getHCP.getSubjectResourceMeta()
StructuralSeriesDescDict = {'T1w_MPR1' : 'T1w_MPR1', 'T1w_MPR2' : 'T1w_MPR2', 'T2w_SPC1' : 'T2w_SPC1', 'T2w_SPC2' : 'T2w_SPC2'}
StructuralSeriesDescScanIdDict = {'T1w_MPR1' : None, 'T1w_MPR2' : None, 'T2w_SPC1' : None, 'T2w_SPC2' : None}
StructuralSeriesQualityDict = {'T1w_MPR1' : None, 'T1w_MPR2' : None, 'T2w_SPC1' : None, 'T2w_SPC2' : None}
StructuralSeriesList = ['T1w_MPR1', 'T1w_MPR2', 'T2w_SPC1', 'T2w_SPC2']
# grab the fieldmap ids...
fieldmapMagIdx = seriesList.index('FieldMap_Magnitude')
filedmapPhaIdx = seriesList.index('FieldMap_Phase')
if (typeList[fieldmapMagIdx] == 'FieldMap') and (qualityList[fieldmapMagIdx] in UsableList):
MagScanId = idList[fieldmapMagIdx]
getHCP.Scan = MagScanId
magScanParms = getHCP.getScanParms()
if ('404 Error' in subjectResources):
pass
else:
subjectResources = subjectResources.get('Names')
SubjectListTmp = list()
SubjectResourceTmp = list()
for j in xrange(0, len(subjectResources)):
if ('preproc' in subjectResources[j]) and ('Structural' not in subjectResources[j]):
currResource = subjectResources[j]
preprocIdx = currResource.find('_preproc')
currSeries = currResource[0:preprocIdx]
getHCP.Resource = subjectResources[j]
preprocMeta = getHCP.getSubjectResourceMeta()
tailCount = 0
for k in xrange(0, len(PackageTail)):
if (currSeries + PackageTail[k] in preprocMeta.get('Name') ):
# print '%s%s found...' % (currSeries, PackageTail[k])
tailCount += 1
namesCount = 0
for k in xrange(0, len(PackageNames)):
if (PackageNames[k] in preprocMeta.get('Name') ):
print '%s found...' % (PackageNames[k])
namesCount += 1
if (tailCount == len(PackageTail)) and (namesCount == len(PackageNames)):
SubjectResourceTmp.append(subjectResources[j])
pass
else:
subjectResources = subjectResources.get('Names')
SubjectListTmp = list()
SubjectResourceTmp = list()
for j in xrange(0, len(subjectResources)):
if ('preproc'
in subjectResources[j]) and ('Structural'
not in subjectResources[j]):
currResource = subjectResources[j]
preprocIdx = currResource.find('_preproc')
currSeries = currResource[0:preprocIdx]
getHCP.Resource = subjectResources[j]
preprocMeta = getHCP.getSubjectResourceMeta()
tailCount = 0
for k in xrange(0, len(PackageTail)):
if (currSeries + PackageTail[k]
in preprocMeta.get('Name')):
# print '%s%s found...' % (currSeries, PackageTail[k])
tailCount += 1
namesCount = 0
for k in xrange(0, len(PackageNames)):
if (PackageNames[k] in preprocMeta.get('Name')):
print '%s found...' % (PackageNames[k])
namesCount += 1
if (tailCount == len(PackageTail)) and (namesCount
== len(PackageNames)):
# os.system(SubmitStr)
subprocess.call(SubmitStr, shell=True)
#=======================================================================
# StructuralHCP
#=======================================================================
elif (Pipeline == 'StructuralHCP'):
PathMatch = list()
ScanIdList = list()
StructResources = [
'T1w_MPR1_unproc', 'T1w_MPR2_unproc', 'T2w_SPC1_unproc',
'T2w_SPC2_unproc'
]
getHCP.Resource = StructResources[0]
resourceMeta = getHCP.getSubjectResourceMeta()
StructuralSeriesDescDict = {
'T1w_MPR1': 'T1w_MPR1',
'T1w_MPR2': 'T1w_MPR2',
'T2w_SPC1': 'T2w_SPC1',
'T2w_SPC2': 'T2w_SPC2'
}
StructuralSeriesDescScanIdDict = {
'T1w_MPR1': None,
'T1w_MPR2': None,
'T2w_SPC1': None,
'T2w_SPC2': None
}
StructuralSeriesQualityDict = {
'T1w_MPR1': None,