def prepare(root,config):
dep_build_dir=config.get('Main','dependency_build_dir')
dep_download_dir=config.get('Main','dependency_download_dir')
trilinos_full_dir=dep_build_dir+"/"+trilinos_dir
trilinos_download_name=dep_download_dir+"/"+trilinos_fname
prefix=config.get('Main','prefix')
tools.checkDeleteDirectory(trilinos_full_dir)
print "Extracting Trilinos"
try:
tools.extract_file(dep_download_dir+"/"+trilinos_fname,dep_build_dir)
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root,config,force=True)
tools.extract_file(dep_download_dir+"/"+trilinos_fname,dep_build_dir)
os.rename(dep_build_dir+"/"+trilinos_extract_dir,
dep_build_dir+"/"+trilinos_dir)
shutil.copy(root+"/installer/build_scripts/posix/trilinos_build.sh",
trilinos_full_dir+"/trilinos_build.sh")
print "Patching Trilinos"
cwd=os.getcwd()
os.chdir(dep_build_dir+"/trilinos/packages/stratimikos/adapters/belos/src")
patch=py_patch.fromfile(root+"/installer/patches/Thyra_BelosLinearOpWithSolve_def.patch")
patch.apply()
os.chdir(dep_build_dir+"/trilinos/packages/thyra/core/src/support/nonlinear/model_evaluator/client_support")
patch=py_patch.fromfile(root+"/installer/patches/thyra_static_initialization_order.patch")
patch.apply()
os.chdir(cwd)
tools.setDefaultConfigOption(config,'Trilinos','cmake_path',prefix+"/bempp/lib/cmake/Trilinos/",overwrite=True)
tools.setCompilerOptions(config,'Trilinos')
def prepare(root,config):
enable_ahmed = tools.to_bool(tools.setDefaultConfigOption(config,'AHMED','enable_ahmed','false'))
if enable_ahmed:
if not config.has_option('AHMED','file_name'):
raise Exception('Need to give full path of tar.gz archived file with AHMED 1.0 release')
ahmed_fname=config.get('AHMED','file_name')
ahmed_fname=tools.normalizePath(config,ahmed_fname)
config.set('AHMED','with_ahmed','ON')
prefix=config.get('Main','prefix')
dep_build_dir = config.get('Main','dependency_build_dir')
arch = config.get('Main','architecture')
if arch == 'ia32':
config.set('AHMED','enable64','OFF')
else:
config.set('AHMED','enable64','ON')
ahmed_full_dir=dep_build_dir+"/ahmed"
tools.checkDeleteDirectory(ahmed_full_dir)
if sys.platform.startswith('darwin'):
config.set('AHMED','lib',prefix+"/bempp/lib/libAHMED.dylib")
elif sys.platform.startswith('linux'):
config.set('AHMED','lib',prefix+"/bempp/lib/libAHMED.so")
else:
raise Exception("Platform not supported")
config.set('AHMED','include_dir',prefix+"/bempp/include/AHMED")
if not os.path.isfile(ahmed_fname):
raise Exception("File '"+ahmed_fname+"' does not exist")
print "Extracting AHMED"
tools.extract_file(ahmed_fname,dep_build_dir)
os.rename(dep_build_dir+"/AHMED_1.0",ahmed_full_dir)
shutil.copy(root+"/installer/build_scripts/posix/ahmed_build.sh",ahmed_full_dir+"/ahmed_build.sh")
print "Patching AHMED"
cwd=os.getcwd()
os.chdir(ahmed_full_dir)
for s in ("ahmed_cmake.patch",
"ahmed_addGeHGeH_single_precision.patch",
"ahmed_changelog_H.h.patch",
"ahmed_pass_clusters_to_aca_matgen_apprx.h.patch",
"ahmed_generic_aca_apprx.h.patch",
"ahmed_check_error_apprx.h.patch",
"ahmed_bbx_apprx.h.patch",
"ahmed_pass_clusters_to_aca_matgen_ACA.h.patch",
"ahmed_frobenius_norm_ACA.h.patch",
"ahmed_zero_pu_pv_ACA.h.patch",
"ahmed_retry_if_zero_and_orig_cross_ACA.h.patch",
"ahmed_changelog_ACA.h.patch",
"ahmed_permuted_indices_bemcluster.h.patch",
"ahmed_changelog_bemcluster.h.patch",
"ahmed_omp.patch",
"ahmed_basmod_h.patch",
"ahmed_mblock.patch"):
py_patch.fromfile(root+"/installer/patches/"+s).apply()
shutil.copy(root+"/installer/patches/ahmed_bbx_bbxbemcluster.h",
"./Include/bbxbemcluster.h")
shutil.copy(root+"/installer/patches/ahmed_bbx_bbxbemblcluster.h",
"./Include/bbxbemblcluster.h")
os.chdir(cwd)
tools.setCompilerOptions(config,'AHMED')
else:
config.set('AHMED','with_ahmed','OFF')
def prepare(root, config):
dep_build_dir = config.get('Main', 'dependency_build_dir')
dep_download_dir = config.get('Main', 'dependency_download_dir')
trilinos_full_dir = dep_build_dir + "/" + trilinos_dir
trilinos_download_name = dep_download_dir + "/" + trilinos_fname
prefix = config.get('Main', 'prefix')
tools.checkDeleteDirectory(trilinos_full_dir)
print "Extracting Trilinos"
try:
tools.extract_file(dep_download_dir + "/" + trilinos_fname,
dep_build_dir)
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root, config, force=True)
tools.extract_file(dep_download_dir + "/" + trilinos_fname,
dep_build_dir)
os.rename(dep_build_dir + "/" + trilinos_extract_dir,
dep_build_dir + "/" + trilinos_dir)
shutil.copy(root + "/installer/build_scripts/posix/trilinos_build.sh",
trilinos_full_dir + "/trilinos_build.sh")
print "Patching Trilinos"
cwd = os.getcwd()
os.chdir(dep_build_dir +
"/trilinos/packages/stratimikos/adapters/belos/src")
patch = py_patch.fromfile(
root + "/installer/patches/Thyra_BelosLinearOpWithSolve_def.patch")
patch.apply()
os.chdir(
dep_build_dir +
"/trilinos/packages/thyra/core/src/support/nonlinear/model_evaluator/client_support"
)
patch = py_patch.fromfile(
root + "/installer/patches/thyra_static_initialization_order.patch")
patch.apply()
os.chdir(dep_build_dir + "/trilinos/cmake/tribits/modules")
patch = py_patch.fromfile(
root + "/installer/patches/trilinos_find_python_interp.patch")
patch.apply()
os.chdir(dep_build_dir + "/trilinos/packages/teuchos/src")
patch = py_patch.fromfile(root +
"/installer/patches/Teuchos_LAPACK.hpp.patch")
patch.apply()
patch = py_patch.fromfile(root +
"/installer/patches/Teuchos_LAPACK.cpp.patch")
patch.apply()
os.chdir(cwd)
tools.setDefaultConfigOption(config,
'Trilinos',
'cmake_path',
prefix + "/bempp/lib/cmake/Trilinos/",
overwrite=True)
tools.setCompilerOptions(config, 'Trilinos')
def prepare(root,config):
dep_build_dir=config.get('Main','dependency_build_dir')
dep_download_dir=config.get('Main','dependency_download_dir')
# Download files
tools.checkCreateDir(dep_build_dir+"/dune")
for i in range(4):
tools.checkDeleteDirectory(dep_build_dir+"/dune/"+dune_names[i])
print "Extracting "+dune_names[i]
try:
tools.extract_file(dep_download_dir+"/"+dune_fnames[i],
dep_build_dir+"/dune/")
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root,config,force=True)
tools.extract_file(dep_download_dir+"/"+dune_fnames[i],
dep_build_dir+"/dune/")
os.rename(dep_build_dir+"/dune/"+dune_extract_names[i],
dep_build_dir+"/dune/"+dune_names[i])
if i==3:
print "Patching "+dune_names[i]
cwd=os.getcwd()
os.chdir(dep_build_dir+"/dune/dune-localfunctions/dune/localfunctions/raviartthomas/raviartthomas02d")
patch=py_patch.fromfile(root+"/installer/patches/dune-localfunctions_raviartthomas.patch")
patch.apply()
os.chdir(dep_build_dir+"/dune/dune-localfunctions/dune/localfunctions/lagrange/pk2d")
patch=py_patch.fromfile(root+"/installer/patches/dune-localfunctions_pk2dlocalbasis.h.patch")
patch.apply()
os.chdir(cwd)
elif i==2:
print "Patching "+dune_names[i]
cwd = os.getcwd()
os.chdir(dep_build_dir+"/dune")
patch = py_patch.fromfile(root+"/installer/patches/dune-grid_dgfparser.patch")
patch.apply()
patch = py_patch.fromfile(root+"/installer/patches/dune-grid_yaspgrid.patch")
patch.apply()
os.chdir(cwd)
elif i==0:
print "Patching "+dune_names[i]
cwd = os.getcwd()
os.chdir(dep_build_dir+"/dune")
patch = py_patch.fromfile(root+"/installer/patches/dune-common_nullptr.patch")
patch.apply()
os.chdir(cwd)
# Copy over dune-foamgrid
tools.checkDeleteDirectory(dep_build_dir+"/dune/dune-foamgrid")
shutil.copytree(root+"/contrib/dune/dune-foamgrid",
dep_build_dir+"/dune/dune-foamgrid")
tools.setCompilerOptions(config,'Dune')
def prepare(root, config):
enable_ahmed = tools.to_bool(
tools.setDefaultConfigOption(config, 'AHMED', 'enable_ahmed', 'false'))
if enable_ahmed:
if not config.has_option('AHMED', 'file_name'):
raise Exception(
'Need to give full path of tar.gz archived file with AHMED 1.0 release'
)
ahmed_fname = config.get('AHMED', 'file_name')
ahmed_fname = tools.normalizePath(config, ahmed_fname)
config.set('AHMED', 'with_ahmed', 'ON')
prefix = config.get('Main', 'prefix')
dep_build_dir = config.get('Main', 'dependency_build_dir')
arch = config.get('Main', 'architecture')
if arch == 'ia32':
config.set('AHMED', 'enable64', 'OFF')
else:
config.set('AHMED', 'enable64', 'ON')
ahmed_full_dir = dep_build_dir + "/ahmed"
tools.checkDeleteDirectory(ahmed_full_dir)
if sys.platform.startswith('darwin'):
config.set('AHMED', 'lib', prefix + "/bempp/lib/libAHMED.dylib")
elif sys.platform.startswith('linux'):
config.set('AHMED', 'lib', prefix + "/bempp/lib/libAHMED.so")
else:
raise Exception("Platform not supported")
config.set('AHMED', 'include_dir', prefix + "/bempp/include/AHMED")
if not os.path.isfile(ahmed_fname):
raise Exception("File '" + ahmed_fname + "' does not exist")
print "Extracting AHMED"
tools.extract_file(ahmed_fname, dep_build_dir)
os.rename(dep_build_dir + "/AHMED_1.0", ahmed_full_dir)
shutil.copy(root + "/installer/build_scripts/posix/ahmed_build.sh",
ahmed_full_dir + "/ahmed_build.sh")
print "Patching AHMED"
cwd = os.getcwd()
os.chdir(ahmed_full_dir)
for s in ("ahmed_cmake.patch",
"ahmed_addGeHGeH_single_precision.patch",
"ahmed_pass_clusters_to_aca_matgen_apprx.h.patch",
"ahmed_generic_aca_apprx.h.patch",
"ahmed_check_error_apprx.h.patch",
"ahmed_pass_clusters_to_aca_matgen_ACA.h.patch",
"ahmed_frobenius_norm_ACA.h.patch",
"ahmed_zero_pu_pv_ACA.h.patch",
"ahmed_retry_if_zero_and_orig_cross_ACA.h.patch",
"ahmed_permuted_indices_bemcluster.h.patch"):
py_patch.fromfile(root + "/installer/patches/" + s).apply()
os.chdir(cwd)
tools.setCompilerOptions(config, 'AHMED')
else:
config.set('AHMED', 'with_ahmed', 'OFF')
def prepare(root, config):
dep_build_dir = config.get("Main", "dependency_build_dir")
dep_download_dir = config.get("Main", "dependency_download_dir")
trilinos_full_dir = dep_build_dir + "/" + trilinos_dir
trilinos_download_name = dep_download_dir + "/" + trilinos_fname
prefix = config.get("Main", "prefix")
tools.checkDeleteDirectory(trilinos_full_dir)
print "Extracting Trilinos"
try:
tools.extract_file(dep_download_dir + "/" + trilinos_fname, dep_build_dir)
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root, config, force=True)
tools.extract_file(dep_download_dir + "/" + trilinos_fname, dep_build_dir)
os.rename(dep_build_dir + "/" + trilinos_extract_dir, dep_build_dir + "/" + trilinos_dir)
shutil.copy(root + "/installer/build_scripts/posix/trilinos_build.sh", trilinos_full_dir + "/trilinos_build.sh")
print "Patching Trilinos"
cwd = os.getcwd()
os.chdir(dep_build_dir + "/trilinos")
patch = py_patch.fromfile(root + "/installer/patches/Thyra_BelosLinearOpWithSolve_def.patch")
patch.apply()
os.chdir(cwd)
# os.chdir(dep_build_dir+"/trilinos/packages/thyra/core/src/support/nonlinear/model_evaluator/client_support")
# patch=py_patch.fromfile(root+"/installer/patches/thyra_static_initialization_order.patch")
# patch.apply()
# os.chdir(dep_build_dir+"/trilinos/cmake/tribits/modules")
# patch=py_patch.fromfile(root+"/installer/patches/trilinos_find_python_interp.patch")
# patch.apply()
# os.chdir(dep_build_dir+"/trilinos/packages/teuchos/numerics/src")
# patch=py_patch.fromfile(root+"/installer/patches/Teuchos_LAPACK.hpp.patch")
# patch.apply()
# patch=py_patch.fromfile(root+"/installer/patches/Teuchos_LAPACK.cpp.patch")
# patch.apply()
os.chdir(dep_build_dir + "/trilinos/packages/epetra/src")
patch = py_patch.fromfile(root + "/installer/patches/Epetra_ConfigDefs.h.patch")
patch.apply()
os.chdir(cwd)
tools.setDefaultConfigOption(
config, "Trilinos", "cmake_path", prefix + "/bempp/lib/cmake/Trilinos/", overwrite=True
)
tools.setCompilerOptions(config, "Trilinos")
trilinos_cxxflags = config.get("Trilinos", "cxxflags")
trilinos_cxxflags = trilinos_cxxflags + " -Wno-c++11-narrowing"
config.set("Trilinos", "cxxflags", trilinos_cxxflags)
def prepare(root,config):
prefix=config.get('Main','prefix')
dep_build_dir = config.get('Main','dependency_build_dir')
dep_download_dir=config.get('Main','dependency_download_dir')
arma_include_dir=prefix+"/bempp/include"
print "Extracting Armadillo"
extract_dir = dep_build_dir+"/"+arma_extract_dir
tools.checkDeleteDirectory(extract_dir)
try:
tools.extract_file(dep_download_dir+"/"+arma_fname,dep_build_dir)
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root,config,force=True)
tools.extract_file(dep_download_dir+"/"+arma_fname,dep_build_dir)
subprocess.check_call("cp -R "+extract_dir+"/include/* "+
prefix+"/bempp/include/",shell=True)
print "Patching Armadillo"
patch=py_patch.fromfile(root+"/installer/patches/armadillo_config.patch")
cwd=os.getcwd()
os.chdir(prefix+"/bempp/include/armadillo_bits")
patch.apply()
os.chdir(cwd)
tools.setDefaultConfigOption(config,"Armadillo","include_dir",
prefix+"/bempp/include",overwrite=True)
def prepare(root, config):
prefix = config.get('Main', 'prefix')
dep_build_dir = config.get('Main', 'dependency_build_dir')
dep_download_dir = config.get('Main', 'dependency_download_dir')
arma_include_dir = prefix + "/bempp/include"
print "Extracting Armadillo"
extract_dir = dep_build_dir + "/" + arma_extract_dir
tools.checkDeleteDirectory(extract_dir)
try:
tools.extract_file(dep_download_dir + "/" + arma_fname, dep_build_dir)
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root, config, force=True)
tools.extract_file(dep_download_dir + "/" + arma_fname, dep_build_dir)
subprocess.check_call("cp -R " + extract_dir + "/include/* " + prefix +
"/bempp/include/",
shell=True)
print "Patching Armadillo"
patch = py_patch.fromfile(root +
"/installer/patches/armadillo_config.patch")
cwd = os.getcwd()
os.chdir(prefix + "/bempp/include/armadillo_bits")
patch.apply()
os.chdir(cwd)
tools.setDefaultConfigOption(config,
"Armadillo",
"include_dir",
prefix + "/bempp/include",
overwrite=True)
def prepare(root,config):
dep_build_dir=config.get('Main','dependency_build_dir')
dep_download_dir=config.get('Main','dependency_download_dir')
# Download files
tools.checkCreateDir(dep_build_dir+"/dune")
for i in range(3):
tools.checkDeleteDirectory(dep_build_dir+"/dune/"+dune_names[i])
print "Extracting "+dune_names[i]
try:
tools.extract_file(dep_download_dir+"/"+dune_fnames[i],
dep_build_dir+"/dune/")
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root,config,force=True)
tools.extract_file(dep_download_dir+"/"+dune_fnames[i],
dep_build_dir+"/dune/")
os.rename(dep_build_dir+"/dune/"+dune_extract_names[i],
dep_build_dir+"/dune/"+dune_names[i])
if i==1:
print "Patching "+dune_names[i]
patch=py_patch.fromfile(root+"/installer/patches/dune-grid.patch")
cwd=os.getcwd()
os.chdir(dep_build_dir+"/dune/dune-grid/dune/grid/utility")
patch.apply()
os.chdir(cwd)
# Copy over dune-foamgrid
tools.checkDeleteDirectory(dep_build_dir+"/dune/dune-foamgrid")
shutil.copytree(root+"/contrib/dune/dune-foamgrid",
dep_build_dir+"/dune/dune-foamgrid")
tools.setCompilerOptions(config,'Dune')
def prepare(root,config):
dep_build_dir=config.get('Main','dependency_build_dir')
dep_download_dir=config.get('Main','dependency_download_dir')
prefix=config.get('Main','prefix')
print "Extracting Tbb"
tools.checkDeleteDirectory(dep_build_dir+"/tbb")
try:
tools.extract_file(dep_download_dir+"/"+tbb_fname,dep_build_dir)
except IOError:
# Possibly a corrupted/truncated file. Try to download once again
download(root,config,force=True)
tools.extract_file(dep_download_dir+"/"+tbb_fname,dep_build_dir)
os.rename(dep_build_dir+"/"+tbb_extract_dir,dep_build_dir+"/tbb")
print "Patching Tbb"
cwd=os.getcwd()
os.chdir(dep_build_dir+"/tbb")
patch=py_patch.fromfile(root+"/installer/patches/tbb_pipeline.patch")
patch.apply()
os.chdir(cwd)
subprocess.check_call("cp -R "+dep_build_dir+"/tbb/include/* "+
prefix+"/bempp/include/",shell=True)
if sys.platform.startswith('darwin'):
libdir_orig = dep_build_dir+"/tbb/lib"
tbb_lib_name="libtbb.dylib"
tbb_lib_name_debug="libtbb_debug.dylib"
tbb_libmalloc_name="libtbbmalloc.dylib"
tbb_libmalloc_name_debug="libtbbmalloc_debug.dylib"
elif sys.platform.startswith('linux'):
tbb_lib_name = "libtbb.so"
tbb_lib_name_debug = "libtbb_debug.so"
tbb_libmalloc_name = "libtbbmalloc.so"
tbb_libmalloc_name_debug = "libtbbmalloc_debug.so"
arch = config.get('Main','architecture')
if arch in ('intel64','ia32','ia64'):
libdir_orig = (dep_build_dir+"/tbb/lib/"+arch+
"/gcc4.4")
else:
raise Exception("Unrecognized architecture: '"+arch+"'")
else:
raise Exception("Platform not supported")
subprocess.check_call("cp -R "+libdir_orig+"/* "+prefix+"/bempp/lib/",shell=True)
tools.setDefaultConfigOption(config,"Tbb",'lib',prefix+"/bempp/lib/"+tbb_lib_name,overwrite=True)
tools.setDefaultConfigOption(config,"Tbb","lib_debug",prefix+"/bempp/lib/"+tbb_lib_name_debug,overwrite=True)
tools.setDefaultConfigOption(config,"Tbb",'libmalloc',prefix+"/bempp/lib/"+tbb_libmalloc_name,overwrite=True)
tools.setDefaultConfigOption(config,"Tbb","libmalloc_debug",prefix+"/bempp/lib/"+tbb_libmalloc_name_debug,overwrite=True)
tools.setDefaultConfigOption(config,"Tbb",'include_dir',prefix+"/bempp/include",overwrite=True)
def install(root,config):
if tools.to_bool(config.get('AHMED','enable_ahmed')):
dep_build_dir = config.get('Main','dependency_build_dir')
prefix = config.get('Main','prefix')
print "Installing AHMED"
cwd=os.getcwd()
os.chdir(dep_build_dir+"/ahmed/build")
subprocess.check_call("make install",shell=True)
g77 = tools.to_bool(config.get('AHMED','with_g77'))
if g77:
os.chdir(prefix+"/bempp/include/AHMED")
print "Patching AHMED for G77 calling BLAS convention"
patch=py_patch.fromfile(root+"/installer/patches/ahmed_blas.patch")
patch.apply()
os.chdir(cwd)
def install(root, config):
if tools.to_bool(config.get('AHMED', 'enable_ahmed')):
dep_build_dir = config.get('Main', 'dependency_build_dir')
prefix = config.get('Main', 'prefix')
print "Installing AHMED"
cwd = os.getcwd()
os.chdir(dep_build_dir + "/ahmed/build")
subprocess.check_call("make install", shell=True)
g77 = tools.to_bool(config.get('AHMED', 'with_g77'))
if g77:
os.chdir(prefix + "/bempp/include/AHMED")
print "Patching AHMED for G77 calling BLAS convention"
patch = py_patch.fromfile(root +
"/installer/patches/ahmed_blas.patch")
patch.apply()
os.chdir(cwd)
