def render (self, include=None, exclude=None, **kwargs): # {{{
"""
Actually returns an image (as png), and will reset the trace if the
include or exclude parameters are different.
"""
inc = self.last_include
exc = self.last_exclude
if include or include == "":
inc = include.split(',')
if exclude or exclude == "":
exc = exclude.split(',')
if inc != self.last_include or exc != self.last_exclude:
# New trace, resetting the old one.
pycallgraph.stop_trace()
pycallgraph.start_trace(filter_func = self.filter_func(inc, exc), reset=True)
pycallgraph.make_dot_graph("." + self.image_file, stop=False)
cherrypy.response.headers['Content-Type'] = "image/png"
f = open("." + self.image_file, "r+b")
return f.read()
def main():
# Do the trace, remember the values for later
pycallgraph.start_trace()
import HTMLParser
pycallgraph.stop_trace()
# Set the edge colour to black for all examples
pycallgraph.settings['edge_colour'] = lambda a, b: 'black'
# Default node colouring
pycallgraph.make_dot_graph('colours-default.png')
# Rainbow
pycallgraph.settings['node_colour'] = rainbow
pycallgraph.make_dot_graph('colours-rainbow.png')
# Greyscale
pycallgraph.settings['node_colour'] = greyscale
pycallgraph.make_dot_graph('colours-greyscale.png')
# Orange/Green
pycallgraph.settings['node_colour'] = orange_green
pycallgraph.make_dot_graph('colours-orange-green.png')
# Random
pycallgraph.settings['node_colour'] = rand
pycallgraph.make_dot_graph('colours-random.png')
def main():
# Do the trace, remember the values for later
pycallgraph.start_trace()
import HTMLParser
pycallgraph.stop_trace()
# Set the edge colour to black for all examples
pycallgraph.settings['edge_colour'] = lambda a, b: 'black'
# Default node colouring
pycallgraph.make_dot_graph('colours-default.png')
# Rainbow
pycallgraph.settings['node_colour'] = rainbow
pycallgraph.make_dot_graph('colours-rainbow.png')
# Greyscale
pycallgraph.settings['node_colour'] = greyscale
pycallgraph.make_dot_graph('colours-greyscale.png')
# Orange/Green
pycallgraph.settings['node_colour'] = orange_green
pycallgraph.make_dot_graph('colours-orange-green.png')
# Random
pycallgraph.settings['node_colour'] = rand
pycallgraph.make_dot_graph('colours-random.png')
def run_profile(self, app, *args, **kwargs):
pycallgraph = self.pycallgraph
pycallgraph.start_trace(reset=True, filter_func=self._filter)
try:
return app(*args, **kwargs)
finally:
pycallgraph.stop_trace()
def run_profile(self, app, *args, **kwargs):
pycallgraph = self.pycallgraph
pycallgraph.start_trace(reset=True, filter_func=self._filter)
try:
return app(*args, **kwargs)
finally:
pycallgraph.stop_trace()
def callwrapper(*args, **kwargs):
if not outfile: # allow deactivating
return fn(*args, **kwargs)
pycallgraph.start_trace()
fn_output = fn(*args, **kwargs)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(outfile)
return fn_output
def call_graph(fac, cmd='fac.query(1)'):
import pycallgraph
import Image
iom = fac.hs.iom
logmsg('Call Graph Command: '+cmd)
callgraph_fpath = iom.get_temp_fpath('callgraph'+cmd+'.png')
pycallgraph.start_trace()
eval(cmd)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(callgraph_fpath)
Image.open(callgraph_fpath).show()
def call_graph(fac, cmd='fac.query(1)'):
import pycallgraph
import Image
iom = fac.hs.iom
logmsg('Call Graph Command: ' + cmd)
callgraph_fpath = iom.get_temp_fpath('callgraph' + cmd + '.png')
pycallgraph.start_trace()
eval(cmd)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(callgraph_fpath)
Image.open(callgraph_fpath).show()
def cuba():
eqs = '''
dv/dt = (ge+gi-(v+49*mV))/(20*ms) : volt
dge/dt = -ge/(5*ms) : volt
dgi/dt = -gi/(10*ms) : volt
'''
eqs = Equations(eqs)
pycallgraph.start_trace(filter_func=ff)
eqs.prepare()
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraphs/cuba-bigcallgraph-Equations.prepare.png')
def cuba():
eqs = '''
dv/dt = (ge+gi-(v+49*mV))/(20*ms) : volt
dge/dt = -ge/(5*ms) : volt
dgi/dt = -gi/(10*ms) : volt
'''
eqs = Equations(eqs)
pycallgraph.start_trace(filter_func=ff)
eqs.prepare()
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(
'callgraphs/cuba-bigcallgraph-Equations.prepare.png')
def callgraphed_application(*args, **kwargs):
''' Start measuring the callgraph and dispatch. '''
global _runcount
# start tracing right before dispatch
pycallgraph.start_trace()
for chunk in app(*args, **kwargs):
yield chunk # exhaust app generator
# stop tracing after request is finished
pycallgraph.stop_trace()
_runcount = _runcount + 1
pycallgraph.make_dot_graph('/'.join(
prefix +
['.profile',
'%s-%s-callgraph.png' % (appname, _runcount)]))
raise StopIteration()
def run(self):
'''Main code runner for testing. To set a new test, update the self.callTest attribute in __init__().
'''
fp = environLocal.getTempFile('.png')
gf = pycallgraph.GlobbingFilter(exclude=self.excludeList)
# create instnace; will call setup routines
ct = self.callTest()
# start timer
print('starting test')
t = common.Timer()
t.start()
pycallgraph.start_trace(filter_func = gf)
ct.testFocus() # run routine
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(fp)
print('elpased time: %s' % t)
# open the completed file
environLocal.launch('png', fp)
def cuba():
N = 4000
Ne = int(N * 0.8)
Ni = N - Ne
p = 80. / N
eqs = '''
dv/dt = (ge+gi-(v+49*mV))/(20*ms) : volt
dge/dt = -ge/(5*ms) : volt
dgi/dt = -gi/(10*ms) : volt
'''
pycallgraph.start_trace(filter_func=ff_nomagicstateupdater)
P = NeuronGroup(N, eqs, threshold=-50 * mV, reset=-60 * mV)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(
'callgraphs/cuba-bigcallgraph-NeuronGroup.__init__.no_magic_state_updater.png'
)
P.v = -60 * mV + 10 * mV * rand(len(P))
Pe = P.subgroup(Ne)
Pi = P.subgroup(Ni)
pycallgraph.start_trace(filter_func=ff)
Ce = Connection(Pe, P, 'ge', weight=1.62 * mV, sparseness=p)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(
'callgraphs/cuba-bigcallgraph-Connection.__init__.png')
Ci = Connection(Pi, P, 'gi', weight=-9 * mV, sparseness=p)
pycallgraph.start_trace(filter_func=ff)
M = SpikeMonitor(P)
trace = StateMonitor(P, 'v', record=0)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(
'callgraphs/cuba-bigcallgraph-Monitors.__init__.png')
pycallgraph.start_trace(filter_func=ff_prepare)
run(.1 * ms)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraphs/cuba-bigcallgraph-run-prepare.png')
def cuba():
N = 4000
Ne = int(N * 0.8)
Ni = N - Ne
p = 80. / N
eqs = '''
dv/dt = (ge+gi-(v+49*mV))/(20*ms) : volt
dge/dt = -ge/(5*ms) : volt
dgi/dt = -gi/(10*ms) : volt
'''
pycallgraph.start_trace(filter_func=ff_nomagicstateupdater)
P = NeuronGroup(N, eqs,
threshold= -50 * mV, reset= -60 * mV)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraphs/cuba-bigcallgraph-NeuronGroup.__init__.no_magic_state_updater.png')
P.v = -60 * mV + 10 * mV * rand(len(P))
Pe = P.subgroup(Ne)
Pi = P.subgroup(Ni)
pycallgraph.start_trace(filter_func=ff)
Ce = Connection(Pe, P, 'ge', weight=1.62 * mV, sparseness=p)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraphs/cuba-bigcallgraph-Connection.__init__.png')
Ci = Connection(Pi, P, 'gi', weight= -9 * mV, sparseness=p)
pycallgraph.start_trace(filter_func=ff)
M = SpikeMonitor(P)
trace = StateMonitor(P, 'v', record=0)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraphs/cuba-bigcallgraph-Monitors.__init__.png')
pycallgraph.start_trace(filter_func=ff_prepare)
run(.1 * ms)
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraphs/cuba-bigcallgraph-run-prepare.png')
def run_tests(test_labels, verbosity=1, interactive=True,
extra_tests=[], nodatabase=False, xml_out=False, callgraph=False, html_only=False):
"""
Test runner which displays a code coverage report at the end of the
run.
"""
cov = coverage.coverage()
cov.erase()
cov.use_cache(0)
test_labels = test_labels or getattr(settings, "TEST_APPS", None)
cover_branch = getattr(settings, "COVERAGE_BRANCH_COVERAGE", False)
cov = coverage.coverage(branch=cover_branch, cover_pylib=False)
cov.use_cache(0)
coverage_modules = []
if test_labels:
for label in test_labels:
# Don't report coverage if you're only running a single
# test case.
if '.' not in label:
app = get_app(label)
coverage_modules.extend(get_all_coverage_modules(app))
else:
for app in get_apps():
coverage_modules.extend(get_all_coverage_modules(app))
morfs = filter(is_wanted_module, coverage_modules)
if callgraph:
try:
import pycallgraph
#_include = [i.__name__ for i in coverage_modules]
_included = getattr(settings, "COVERAGE_INCLUDE_MODULES", [])
_excluded = getattr(settings, "COVERAGE_EXCLUDE_MODULES", [])
_included = [i.strip('*')+'*' for i in _included]
_excluded = [i.strip('*')+'*' for i in _included]
_filter_func = pycallgraph.GlobbingFilter(
include=_included or ['*'],
#include=['lotericas.*'],
#exclude=[],
#max_depth=options.max_depth,
)
pycallgraph_enabled = True
except ImportError:
pycallgraph_enabled = False
else:
pycallgraph_enabled = False
cov.start()
if pycallgraph_enabled:
pycallgraph.start_trace(filter_func=_filter_func)
if nodatabase:
results = nodatabase_run_tests(test_labels, verbosity, interactive,
extra_tests)
else:
tr = django_test_runner(verbosity, interactive)
results = tr.run_tests(test_labels, extra_tests)
#results = django_test_runner(test_labels, verbosity, interactive,
# extra_tests)
if callgraph and pycallgraph_enabled:
pycallgraph.stop_trace()
cov.stop()
if getattr(settings, "COVERAGE_HTML_REPORT", False) or \
os.environ.get("COVERAGE_HTML_REPORT"):
output_dir = getattr(settings, "COVERAGE_HTML_DIRECTORY", "covhtml")
report_method = curry(cov.html_report, directory=output_dir)
if callgraph and pycallgraph_enabled:
callgraph_path = output_dir + '/' + 'callgraph.png'
pycallgraph.make_dot_graph(callgraph_path)
print >>sys.stdout
print >>sys.stdout, "Coverage HTML reports were output to '%s'" %output_dir
if callgraph:
if pycallgraph_enabled:
print >>sys.stdout, "Call graph was output to '%s'" %callgraph_path
else:
print >>sys.stdout, "Call graph was not generated: Install 'pycallgraph' module to do so"
else:
report_method = cov.report
if coverage_modules:
if xml_out:
# using the same output directory as the --xml function uses for testing
if not os.path.isdir(os.path.join("temp", "xml")):
os.makedirs(os.path.join("temp", "xml"))
output_filename = 'temp/xml/coverage_output.xml'
cov.xml_report(morfs=coverage_modules, outfile=output_filename)
if not html_only:
cov.report(coverage_modules, show_missing=1)
return results
M = SpikeMonitor(P)
net = MagicNetwork()
start = time.time()
net.prepare()
net.run(1 * ms)
print 'Preparation time:', time.time() - start
if do_callgraph:
import pycallgraph
def ff(call_stack, module_name, class_name, func_name, full_name):
if not 'brian' in module_name: return False
return True
pycallgraph.start_trace(filter_func=ff)
start = time.time()
net.run(1 * second)
print 'Run time:', time.time() - start
if do_callgraph:
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraph.png')
if plot_output:
raster_plot(M)
show()
def run(self, runWithEnviron=False):
'''Main code runner for testing. To set a new test, update the self.callTest attribute in __init__().
'''
suffix = '.svg'
fmt = suffix[1:]
_MOD = "test.timeGraphs.py"
if runWithEnviron:
from music21 import environment
environLocal = environment.Environment(_MOD)
fp = environLocal.getTempFile(suffix)
# manually get a temporary file
else:
import tempfile
import os
import sys
if os.name in ['nt'] or sys.platform.startswith('win'):
platform = 'win'
else:
platform = 'other'
tempdir = os.path.join(tempfile.gettempdir(), 'music21')
if platform != 'win':
fd, fp = tempfile.mkstemp(dir=tempdir, suffix=suffix)
if isinstance(fd, int):
# on MacOS, fd returns an int, like 3, when this is called
# in some context (specifically, programmatically in a
# TestExternal class. the fp is still valid and works
# TODO: this did not work on MacOS 10.6.8 w/ py 2.7
pass
else:
fd.close()
else:
tf = tempfile.NamedTemporaryFile(dir=tempdir, suffix=suffix)
fp = tf.name
tf.close()
if self.includeList is not None:
gf = pycallgraph.GlobbingFilter(include=self.includeList, exclude=self.excludeList)
else:
gf = pycallgraph.GlobbingFilter(exclude=self.excludeList)
# create instance; will call setup routines
ct = self.callTest()
# start timer
print('%s starting test' % _MOD)
t = Timer()
t.start()
pycallgraph.start_trace(filter_func = gf)
ct.testFocus() # run routine
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(fp, format=fmt, tool='/usr/local/bin/dot')
print('elapsed time: %s' % t)
# open the completed file
print('file path: ' + fp)
try:
environLocal = environment.Environment(_MOD)
environLocal.launch(format, fp)
except NameError:
pass
def __call__(self, *args, **kwargs):
pycallgraph.start_trace(reset=False)
return_value = self.func(*args, **kwargs)
pycallgraph.stop_trace()
return return_value
def run_tests(test_labels,
verbosity=1,
interactive=True,
extra_tests=[],
nodatabase=False,
xml_out=False,
callgraph=False):
"""
Test runner which displays a code coverage report at the end of the
run.
"""
cov = coverage.coverage()
cov.erase()
cov.use_cache(0)
test_labels = test_labels or getattr(settings, "TEST_APPS", None)
cover_branch = getattr(settings, "COVERAGE_BRANCH_COVERAGE", False)
cov = coverage.coverage(branch=cover_branch, cover_pylib=False)
cov.use_cache(0)
coverage_modules = []
if test_labels:
for label in test_labels:
# Don't report coverage if you're only running a single
# test case.
if '.' not in label:
app = get_app(label)
coverage_modules.extend(get_all_coverage_modules(app))
else:
for app in get_apps():
coverage_modules.extend(get_all_coverage_modules(app))
morfs = filter(is_wanted_module, coverage_modules)
if callgraph:
try:
import pycallgraph
#_include = [i.__name__ for i in coverage_modules]
_included = getattr(settings, "COVERAGE_INCLUDE_MODULES", [])
_excluded = getattr(settings, "COVERAGE_EXCLUDE_MODULES", [])
_included = [i.strip('*') + '*' for i in _included]
_excluded = [i.strip('*') + '*' for i in _included]
_filter_func = pycallgraph.GlobbingFilter(
include=_included or ['*'],
#include=['lotericas.*'],
#exclude=[],
#max_depth=options.max_depth,
)
pycallgraph_enabled = True
except ImportError:
pycallgraph_enabled = False
else:
pycallgraph_enabled = False
cov.start()
if pycallgraph_enabled:
pycallgraph.start_trace(filter_func=_filter_func)
if nodatabase:
results = nodatabase_run_tests(test_labels, verbosity, interactive,
extra_tests)
else:
results = django_test_runner(test_labels, verbosity, interactive,
extra_tests)
if callgraph and pycallgraph_enabled:
pycallgraph.stop_trace()
cov.stop()
report_methd = cov.report
if getattr(settings, "COVERAGE_HTML_REPORT", False) or \
os.environ.get("COVERAGE_HTML_REPORT"):
output_dir = getattr(settings, "COVERAGE_HTML_DIRECTORY", "covhtml")
report_method = curry(cov.html_report, directory=output_dir)
if callgraph and pycallgraph_enabled:
callgraph_path = output_dir + '/' + 'callgraph.png'
pycallgraph.make_dot_graph(callgraph_path)
print >> sys.stdout
print >> sys.stdout, "Coverage HTML reports were output to '%s'" % output_dir
if callgraph:
if pycallgraph_enabled:
print >> sys.stdout, "Call graph was output to '%s'" % callgraph_path
else:
print >> sys.stdout, "Call graph was not generated: Install 'pycallgraph' module to do so"
else:
report_method = cov.report
if coverage_modules:
if xml_out:
# using the same output directory as the --xml function uses for testing
if not os.path.isdir(os.path.join("temp", "xml")):
os.makedirs(os.path.join("temp", "xml"))
output_filename = 'temp/xml/coverage_output.xml'
cov.xml_report(morfs=coverage_modules, outfile=output_filename)
cov.report(coverage_modules, show_missing=1)
return results
def stop (self): # {{{
pycallgraph.stop_trace()
self.started = False
#structure='dense',
)
M = SpikeMonitor(P)
net = MagicNetwork()
start = time.time()
net.prepare()
net.run(1*ms)
print 'Preparation time:', time.time()-start
if do_callgraph:
import pycallgraph
def ff(call_stack, module_name, class_name, func_name, full_name):
if not 'brian' in module_name: return False
return True
pycallgraph.start_trace(filter_func=ff)
start = time.time()
net.run(1 * second)
print 'Run time:', time.time()-start
if do_callgraph:
pycallgraph.stop_trace()
pycallgraph.make_dot_graph('callgraph.png')
if plot_output:
raster_plot(M)
show()
def pygraphit():
import pycallgraph
pycallgraph.start_trace()
pycallgraph.stop_trace()
pycallgraph.make_graph('/tmp/bleh.png')
def run(self, runWithEnviron=True):
'''
Main code runner for testing. To set a new test, update the self.callTest attribute in __init__().
Note that the default of runWithEnviron imports music21.environment. That might
skew results
'''
suffix = '.svg'
outputFormat = suffix[1:]
_MOD = "test.timeGraphs.py"
if runWithEnviron:
from music21 import environment
environLocal = environment.Environment(_MOD)
fp = environLocal.getTempFile(suffix)
# manually get a temporary file
else:
import tempfile
import os
import sys
if os.name in ['nt'] or sys.platform.startswith('win'):
platform = 'win'
else:
platform = 'other'
tempdir = os.path.join(tempfile.gettempdir(), 'music21')
if platform != 'win':
fd, fp = tempfile.mkstemp(dir=tempdir, suffix=suffix)
if isinstance(fd, int):
# on MacOS, fd returns an int, like 3, when this is called
# in some context (specifically, programmatically in a
# TestExternal class. the fp is still valid and works
# TODO: this did not work on MacOS 10.6.8 w/ py 2.7
pass
else:
fd.close()
else:
tf = tempfile.NamedTemporaryFile(dir=tempdir, suffix=suffix)
fp = tf.name
tf.close()
if self.includeList is not None:
gf = pycallgraph.GlobbingFilter(include=self.includeList,
exclude=self.excludeList)
else:
gf = pycallgraph.GlobbingFilter(exclude=self.excludeList)
# create instance; will call setup routines
ct = self.callTest()
# start timer
print('%s starting test' % _MOD)
t = Timer()
t.start()
pycallgraph.start_trace(filter_func=gf)
ct.testFocus() # run routine
pycallgraph.stop_trace()
pycallgraph.make_dot_graph(fp,
format=outputFormat,
tool='/usr/local/bin/dot')
print('elapsed time: %s' % t)
# open the completed file
print('file path: ' + fp)
try:
environLocal = environment.Environment(_MOD)
environLocal.launch(outputFormat, fp)
except NameError:
pass
def stop(self):
pycallgraph.stop_trace()