def _dm_factory(self, p):
dm = XLSDataManager()
dm.open(p)
return dm
class XLSIrradiationSource:
def __init__(self, p):
self._dm = XLSDataManager()
self._dm.open(p)
def connect(self):
return True
def get_irradiation_names(self):
dm = self._dm
sheet = dm.get_sheet(('Irradiations', 0))
nameidx = dm.get_column_idx(NAME, sheet)
return list({r[nameidx].value for r in dm.iterrows(sheet, start=1)})
def get_import_spec(self, name):
spec = ImportSpec()
i = Irradiation()
i.name = name
spec.irradiation = i
i.doses = self._get_doses(name)
nlevels = []
dm = self._dm
sheet = dm.get_sheet(('Irradiations', 0))
nameidx = dm.get_column_idx(NAME, sheet)
levelidx = dm.get_column_idx(LEVEL, sheet)
pridx = dm.get_column_idx(PR, sheet)
holderidx = dm.get_column_idx(HOLDER, sheet)
zidx = dm.get_column_idx(Z, sheet)
noteidx = dm.get_column_idx(NOTE, sheet)
z = 0
for row in dm.iterrows(sheet, start=1):
if row[nameidx].value == name:
level = Level()
level.name = row[levelidx].value
level.z = row[zidx].value or z
z = level.z + 1
level.note = row[noteidx].value
prod = Production()
prod.name = row[pridx].value
level.production = prod
level.holder = row[holderidx].value
pos = self._get_positions(name, level.name)
level.positions = pos
nlevels.append(level)
i.levels = nlevels
return spec
def _get_doses(self, name):
dm = self._dm
sheet = dm.get_sheet(('Chronologies', 1))
doses = []
nameidx = dm.get_column_idx(NAME, sheet)
poweridx = dm.get_column_idx(('Power',), sheet)
startidx = dm.get_column_idx(('Start',), sheet)
endidx = dm.get_column_idx(('End',), sheet)
for row in dm.iterrows(sheet, start=1):
if row[nameidx].value == name:
p = row[poweridx].value
s = row[startidx].value
e = row[endidx].value
doses.append((p, s, e))
return doses
def _get_positions(self, name, level):
dm = self._dm
sheet = dm.get_sheet(('Positions', 2))
nameidx = dm.get_column_idx(NAME, sheet)
levelidx = dm.get_column_idx(LEVEL, sheet)
positionidx = dm.get_column_idx(POSITION, sheet)
sampleidx = dm.get_column_idx(SAMPLE, sheet)
materialidx = dm.get_column_idx(MATERIAL, sheet)
projectidx = dm.get_column_idx(PROJECT, sheet)
piidx = dm.get_column_idx(PI, sheet)
noteidx = dm.get_column_idx(NOTE, sheet)
weightidx = dm.get_column_idx(WEIGHT, sheet)
ps = []
for row in dm.iterrows(sheet, start=1):
if row[nameidx].value == name and row[levelidx].value == level:
pos = Position()
pos.position = row[positionidx].value
sample = Sample()
sample.name = row[sampleidx].value
sample.material = row[materialidx].value
project = Project()
project.name = row[projectidx].value
project.principal_investigator = row[piidx].value
sample.project = project
pos.sample = sample
pos.note = row[noteidx].value or ''
pos.weight = row[weightidx].value or 0
ps.append(pos)
return ps
def __init__(self, p):
self._dm = XLSDataManager()
self._dm.open(p)
def _load_level_from_file(self, p, positions, irradiation, level):
"""
use an xls file to enter irradiation positions
looks for sheet named "IrradiationLoading"
if not present use 0th sheet
"""
dm = XLSDataManager()
dm.open(p)
header_offset = 1
sheet = dm.get_sheet(('IrradiationLoading', 0))
idxs = self._get_idxs(dm, sheet)
if not idxs:
return
rows = [ri for ri in range(sheet.nrows - header_offset)
if sheet.cell_value(ri + header_offset, idxs['level']) == level]
prog = self.progress
if prog:
prog.max = len(rows) - 1
for ri in rows:
ri += header_offset
project, material = None, None
sample = sheet.cell_value(ri, idxs['sample'])
if sample.lower() == 'monitor':
sample = self.monitor_name
if sample:
#is this a sample in the database
dbsam = self.db.get_sample(sample)
if dbsam:
if dbsam.project:
project = dbsam.project.name
if dbsam.material:
material = dbsam.material.name
if project is None:
project = sheet.cell_value(ri, idxs['project'])
if material is None:
material = sheet.cell_value(ri, idxs['material'])
pos = sheet.cell_value(ri, idxs['position'])
weight = sheet.cell_value(ri, idxs['weight'])
note = sheet.cell_value(ri, idxs['note'])
if prog:
prog.change_message('Importing {}'.format(pos))
prog.increment()
ir_pos, canvas_pos = self._get_position(pos, positions)
if ir_pos:
ir_pos.trait_set(weight=weight,
project=project,
material=material,
sample=sample,
note=note,
)
if sample:
canvas_pos.fill = True
else:
msg = 'Invalid position for this tray {}'.format(ir_pos)
#self.warning_dialog()
self.warning(msg)
def _load_level_from_file(self, p, positions, irradiation, level):
"""
use an xls file to enter irradiation positions
looks for sheet named "IrradiationLoading"
if not present use 0th sheet
"""
dm = XLSDataManager()
dm.open(p)
header_offset = 1
sheet = dm.get_sheet(('IrradiationLoading', 0))
idxs = self._get_idxs(dm, sheet)
if not idxs:
return
rows = [
ri for ri in range(sheet.nrows - header_offset)
if sheet.cell_value(ri + header_offset, idxs['level']) == level
]
prog = self.progress
if prog:
prog.max = len(rows) - 1
for ri in rows:
ri += header_offset
project, material = None, None
sample = sheet.cell_value(ri, idxs['sample'])
if sample.lower() == 'monitor':
sample = self.monitor_name
if sample:
#is this a sample in the database
dbsam = self.db.get_sample(sample)
if dbsam:
if dbsam.project:
project = dbsam.project.name
if dbsam.material:
material = dbsam.material.name
if project is None:
project = sheet.cell_value(ri, idxs['project'])
if material is None:
material = sheet.cell_value(ri, idxs['material'])
pos = sheet.cell_value(ri, idxs['position'])
weight = sheet.cell_value(ri, idxs['weight'])
note = sheet.cell_value(ri, idxs['note'])
if prog:
prog.change_message('Importing {}'.format(pos))
prog.increment()
ir_pos, canvas_pos = self._get_position(pos, positions)
if ir_pos:
ir_pos.trait_set(
weight=weight,
project=project,
material=material,
sample=sample,
note=note,
)
if sample:
canvas_pos.fill = True
else:
msg = 'Invalid position for this tray {}'.format(ir_pos)
#self.warning_dialog()
self.warning(msg)
def __init__(self, p):
self._dm = XLSDataManager()
self._dm.open(p)
class XLSIrradiationSource:
def __init__(self, p):
self._dm = XLSDataManager()
self._dm.open(p)
def connect(self):
return True
def get_irradiation_names(self):
dm = self._dm
sheet = dm.get_sheet(('Irradiations', 0))
nameidx = dm.get_column_idx(NAME, sheet)
return list({r[nameidx].value for r in dm.iterrows(sheet, start=1)})
def get_import_spec(self, name):
spec = ImportSpec()
i = Irradiation()
i.name = name
spec.irradiation = i
i.doses = self._get_doses(name)
nlevels = []
dm = self._dm
sheet = dm.get_sheet(('Irradiations', 0))
nameidx = dm.get_column_idx(NAME, sheet)
levelidx = dm.get_column_idx(LEVEL, sheet)
pridx = dm.get_column_idx(PR, sheet)
holderidx = dm.get_column_idx(HOLDER, sheet)
zidx = dm.get_column_idx(Z, sheet)
noteidx = dm.get_column_idx(NOTE, sheet)
z = 0
for row in dm.iterrows(sheet, start=1):
if row[nameidx].value == name:
level = Level()
level.name = row[levelidx].value
level.z = row[zidx].value or z
z = level.z + 1
level.note = row[noteidx].value
prod = Production()
prod.name = row[pridx].value
level.production = prod
level.holder = row[holderidx].value
pos = self._get_positions(name, level.name)
level.positions = pos
nlevels.append(level)
i.levels = nlevels
return spec
def _get_doses(self, name):
dm = self._dm
sheet = dm.get_sheet(('Chronologies', 1))
doses = []
nameidx = dm.get_column_idx(NAME, sheet)
poweridx = dm.get_column_idx(('Power', ), sheet)
startidx = dm.get_column_idx(('Start', ), sheet)
endidx = dm.get_column_idx(('End', ), sheet)
for row in dm.iterrows(sheet, start=1):
if row[nameidx].value == name:
p = row[poweridx].value
s = row[startidx].value
e = row[endidx].value
doses.append((p, s, e))
return doses
def _get_positions(self, name, level):
dm = self._dm
sheet = dm.get_sheet(('Positions', 2))
nameidx = dm.get_column_idx(NAME, sheet)
levelidx = dm.get_column_idx(LEVEL, sheet)
positionidx = dm.get_column_idx(POSITION, sheet)
sampleidx = dm.get_column_idx(SAMPLE, sheet)
materialidx = dm.get_column_idx(MATERIAL, sheet)
projectidx = dm.get_column_idx(PROJECT, sheet)
piidx = dm.get_column_idx(PI, sheet)
noteidx = dm.get_column_idx(NOTE, sheet)
weightidx = dm.get_column_idx(WEIGHT, sheet)
ps = []
for row in dm.iterrows(sheet, start=1):
if row[nameidx].value == name and row[levelidx].value == level:
pos = Position()
pos.position = row[positionidx].value
sample = Sample()
sample.name = row[sampleidx].value
sample.material = row[materialidx].value
project = Project()
project.name = row[projectidx].value
project.principal_investigator = row[piidx].value
sample.project = project
pos.sample = sample
pos.note = row[noteidx].value or ''
pos.weight = row[weightidx].value or 0
ps.append(pos)
return ps
def _dm_factory(self, p):
dm = XLSDataManager()
dm.open(p)
return dm
# ============= EOF =============================================
# def get_nlevels(self, irradname):
# dm =self.dm
# if not dm:
# raise AttributeError
#
# sheet = self.dm.get_sheet(('Irradiations',0))
# idx = dm.get_column_idx('Name', sheet=sheet)
# lidx = dm.get_column_idx('Levels', sheet=sheet)
# for ri, ni in enumerate(sheet.col(idx)):
# if ni.value==irradname:
# level_str = sheet.cell(ri, lidx)
# ps = parse_level_str(level_str.value)
# return len(ps) if ps else 0
# def iterate_irradiations2(self):
# dm = self.dm
# sheet = dm.get_sheet(('Irradiations', 0))
#
# irrads=[]
# rows = []
# for ri in dm.iterrows(sheet):
# # for ji in dm.iterrows(sheet):
# if ctype_text[ri[1].ctype]=='empty':
# irrads.append(rows)
# rows=[]
# else:
# rows.append(ri)
#
# if rows:
# irrads.append(rows)
# return irrads
#
#
# def _load_level_from_file(self, p, positions, irradiation, level):
# """
# use an xls file to enter irradiation positions
#
# looks for sheet named "IrradiationLoading"
# if not present use 0th sheet
# """
#
# # dm = XLSDataManager()
# # dm.open(p)
# dm = self._dm_factory(p)
#
# header_offset = 1
# sheet = dm.get_sheet(('IrradiationLoading', 0))
# idxs = self._get_idxs(dm, sheet)
#
# if not idxs:
# return
#
# rows = [ri for ri in range(sheet.nrows - header_offset)
# if sheet.cell_value(ri + header_offset, idxs['level']) == level]
#
# prog = self.progress
# if prog:
# prog.max = len(rows) - 1
#
# for ri in rows:
# ri += header_offset
#
# project, material = None, None
# sample = sheet.cell_value(ri, idxs['sample'])
# if sample.lower() == 'monitor':
# sample = self.monitor_name
#
# if sample:
# #is this a sample in the database
# dbsam = self.db.get_sample(sample)
# if dbsam:
# if dbsam.project:
# project = dbsam.project.name
# if dbsam.material:
# material = dbsam.material.name
#
# if project is None:
# project = sheet.cell_value(ri, idxs['project'])
# if material is None:
# material = sheet.cell_value(ri, idxs['material'])
#
# pos = sheet.cell_value(ri, idxs['position'])
#
# weight = sheet.cell_value(ri, idxs['weight'])
# note = sheet.cell_value(ri, idxs['note'])
#
# if prog:
# prog.change_message('Importing {}'.format(pos))
# prog.increment()
#
# ir_pos, canvas_pos = self._get_position(pos, positions)
# if ir_pos:
# ir_pos.trait_set(weight=weight,
# project=project,
# material=material,
# sample=sample,
# note=note)
# if sample:
# canvas_pos.fill = True
# else:
# msg = 'Invalid position for this tray {}'.format(ir_pos)
# #self.warning_dialog()
# self.warning(msg)