def record(state, amp_name, amp_serial, record_dir, eeg_only):
# set data file name
filename = time.strftime(record_dir + "/%Y%m%d-%H%M%S-raw.pcl",
time.localtime())
qc.print_c('>> Output file: %s' % (filename), 'W')
# test writability
try:
qc.make_dirs(record_dir)
open(
filename,
'w').write('The data will written when the recording is finished.')
except:
raise RuntimeError('Problem writing to %s. Check permission.' %
filename)
# start a server for sending out data filename when software trigger is used
outlet = start_server('StreamRecorderInfo', channel_format='string',\
source_id=filename, stype='Markers')
# connect to EEG stream server
sr = StreamReceiver(amp_name=amp_name,
amp_serial=amp_serial,
eeg_only=eeg_only)
# start recording
qc.print_c('\n>> Recording started (PID %d).' % os.getpid(), 'W')
qc.print_c('\n>> Press Enter to stop recording', 'G')
tm = qc.Timer(autoreset=True)
next_sec = 1
while state.value == 1:
sr.acquire()
if sr.get_buflen() > next_sec:
duration = str(datetime.timedelta(seconds=int(sr.get_buflen())))
print('RECORDING %s' % duration)
next_sec += 1
tm.sleep_atleast(0.01)
# record stop
qc.print_c('>> Stop requested. Copying buffer', 'G')
buffers, times = sr.get_buffer()
signals = buffers
events = None
# channels = total channels from amp, including trigger channel
data = {
'signals': signals,
'timestamps': times,
'events': events,
'sample_rate': sr.get_sample_rate(),
'channels': sr.get_num_channels(),
'ch_names': sr.get_channel_names()
}
qc.print_c('Saving raw data ...', 'W')
qc.save_obj(filename, data)
print('Saved to %s\n' % filename)
qc.print_c('Converting raw file into a fif format.', 'W')
pcl2fif(filename)
def record(recordState, amp_name, amp_serial, record_dir, eeg_only, recordLogger=logger, queue=None):
redirect_stdout_to_queue(recordLogger, queue, 'INFO')
# set data file name
timestamp = time.strftime('%Y%m%d-%H%M%S', time.localtime())
pcl_file = "%s/%s-raw.pcl" % (record_dir, timestamp)
eve_file = '%s/%s-eve.txt' % (record_dir, timestamp)
recordLogger.info('>> Output file: %s' % (pcl_file))
# test writability
try:
qc.make_dirs(record_dir)
open(pcl_file, 'w').write('The data will written when the recording is finished.')
except:
raise RuntimeError('Problem writing to %s. Check permission.' % pcl_file)
# start a server for sending out data pcl_file when software trigger is used
outlet = start_server('StreamRecorderInfo', channel_format='string',\
source_id=eve_file, stype='Markers')
# connect to EEG stream server
sr = StreamReceiver(buffer_size=0, amp_name=amp_name, amp_serial=amp_serial, eeg_only=eeg_only)
# start recording
recordLogger.info('\n>> Recording started (PID %d).' % os.getpid())
qc.print_c('\n>> Press Enter to stop recording', 'G')
tm = qc.Timer(autoreset=True)
next_sec = 1
while recordState.value == 1:
sr.acquire()
if sr.get_buflen() > next_sec:
duration = str(datetime.timedelta(seconds=int(sr.get_buflen())))
recordLogger.info('RECORDING %s' % duration)
next_sec += 1
tm.sleep_atleast(0.001)
# record stop
recordLogger.info('>> Stop requested. Copying buffer')
buffers, times = sr.get_buffer()
signals = buffers
events = None
# channels = total channels from amp, including trigger channel
data = {'signals':signals, 'timestamps':times, 'events':events,
'sample_rate':sr.get_sample_rate(), 'channels':sr.get_num_channels(),
'ch_names':sr.get_channel_names(), 'lsl_time_offset':sr.lsl_time_offset}
recordLogger.info('Saving raw data ...')
qc.save_obj(pcl_file, data)
recordLogger.info('Saved to %s\n' % pcl_file)
# automatically convert to fif and use event file if it exists (software trigger)
if os.path.exists(eve_file):
recordLogger.info('Found matching event file, adding events.')
else:
eve_file = None
recordLogger.info('Converting raw file into fif.')
pcl2fif(pcl_file, external_event=eve_file)
def add_lsl_events(event_dir, offset=0, recursive=False, interactive=True):
"""
Add events recorded with LSL timestamps to raw data files.
Useful for software triggering.
@params
-------
event_dir:
Path to *-eve.txt files.
offset:
Timestamp offset (in seconds) in case the LSL server timestamps are shifted.
Some OpenVibe acquisition servers send timestamps of their own running time (always
starting from 0) instead of LSL timestamps. In this case, the only way to deal with
this problem is to add an offset, a difference between LSL timestamp and OpenVibe
server time stamp.
recursive:
Search sub-directories recursively.
Kyuhwa Lee
Swiss Federal Institute of Technology Lausanne (EPFL)
2017
"""
import pycnbi.utils.q_common as qc
from pycnbi.utils.convert2fif import pcl2fif
from builtins import input
offset = float(offset)
if offset != 0:
logger.info_yellow('Time offset = %.3f' % offset)
to_process = []
logger.info('Files to be processed')
if recursive:
for d in qc.get_dir_list(event_dir):
for f in qc.get_file_list(d, True):
if f[-8:] == '-eve.txt':
to_process.append(f)
logger.info(f)
else:
for f in qc.get_file_list(event_dir, True):
if f[-8:] == '-eve.txt':
to_process.append(f)
logger.info(f)
if interactive:
input('\nPress Enter to start')
for f in to_process:
pclfile = f.replace('-eve.txt', '-raw.pcl')
pcl2fif(pclfile, external_event=f, offset=offset, overwrite=True)
