def test_gene_ids_of_gene_name_hla_grch38():
hla_a_gene_ids = ensembl_grch38.gene_ids_of_gene_name("HLA-A")
assert 'ENSG00000206503' in hla_a_gene_ids, hla_a_gene_ids
hla_b_gene_ids = ensembl_grch38.gene_ids_of_gene_name("HLA-B")
assert 'ENSG00000234745' in hla_b_gene_ids, hla_b_gene_ids
hla_c_gene_ids = ensembl_grch38.gene_ids_of_gene_name("HLA-C")
assert 'ENSG00000204525' in hla_c_gene_ids, hla_c_gene_ids
def test_gene_name_of_HLA_gene_id():
gene_ids = ensembl_grch38.gene_ids_of_gene_name("HLA-A")
gene_names = [
ensembl_grch38.gene_name_of_gene_id(gene_id) for gene_id in gene_ids
]
unique_gene_names = list(set(gene_names))
assert len(unique_gene_names) == 1, (len(unique_gene_names),
unique_gene_names)
gene_name = unique_gene_names[0]
assert gene_name == "HLA-A", gene_name
def test_gene_name_of_HLA_gene_id():
gene_ids = ensembl_grch38.gene_ids_of_gene_name("HLA-A")
gene_names = [
ensembl_grch38.gene_name_of_gene_id(gene_id)
for gene_id in gene_ids
]
unique_gene_names = list(set(gene_names))
assert len(unique_gene_names) == 1, (len(unique_gene_names), unique_gene_names)
gene_name = unique_gene_names[0]
assert gene_name == "HLA-A", gene_name
def test_gene_id_of_invalid_name():
with assert_raises(Exception):
ensembl_grch38.gene_ids_of_gene_name(
"A wonderous pony sees through your soul")
