def test_simscore_arg_forwarding(self):
with patch.object(HPOTerm, 'similarity_score',
return_value=None) as mock_simscore:
set1 = HPOSet([self.terms[0]])
set2 = HPOSet([self.terms[1]])
_ = HPOSet._sim_score(set1, set2)
mock_simscore.assert_called_once_with(self.terms[1], '', '')
mock_simscore.reset_mock()
_ = HPOSet._sim_score(set1, set2, 'foo')
mock_simscore.assert_called_once_with(self.terms[1], 'foo', '')
mock_simscore.reset_mock()
_ = HPOSet._sim_score(set1, set2, kind='foo')
mock_simscore.assert_called_once_with(self.terms[1], 'foo', '')
mock_simscore.reset_mock()
_ = HPOSet._sim_score(set1, set2, 'foo', 'bar')
mock_simscore.assert_called_once_with(self.terms[1], 'foo', 'bar')
mock_simscore.reset_mock()
_ = HPOSet._sim_score(set1, set2, kind='foo', method='bar')
mock_simscore.assert_called_once_with(self.terms[1], 'foo', 'bar')
mock_simscore.reset_mock()
_ = HPOSet._sim_score(set1, set2, method='bar')
mock_simscore.assert_called_once_with(self.terms[1], '', 'bar')
mock_simscore.reset_mock()
_ = HPOSet._sim_score(set1, set2, None, 'bar')
mock_simscore.assert_called_once_with(self.terms[1], None, 'bar')
mock_simscore.reset_mock()
def test_single_comparison_sim_score(self):
with patch.object(HPOTerm,
'similarity_score',
side_effect=[5, 0.5, 2, 4, 2, 3, 1,
1]) as mock_simscore:
set1 = HPOSet([self.terms[0]])
set2 = HPOSet([self.terms[1]])
scores = HPOSet._sim_score(set1, set2)
mock_simscore.assert_called_once_with(self.terms[1], '', '')
self.assertEqual(mock_simscore.call_count, 1)
self.assertEqual(list(scores.columns), [[5]])
self.assertEqual(list(scores.rows), [[5]])
def test_empty_sim_score(self):
with patch.object(HPOTerm,
'similarity_score',
side_effect=[1, 0.5, 2, 4, 2, 3, 1,
1]) as mock_simscore:
set1 = HPOSet([])
set2 = HPOSet(self.terms[2:6])
scores = HPOSet._sim_score(set1, set2, 'omim')
self.assertEqual(scores._data, [])
mock_simscore.assert_not_called()
mock_simscore.reset_mock()
set1 = HPOSet(self.terms[0:2])
set2 = HPOSet([])
scores = HPOSet._sim_score(set1, set2, 'omim')
self.assertEqual(scores._data, [])
mock_simscore.assert_not_called()
mock_simscore.reset_mock()
set1 = HPOSet([])
set2 = HPOSet([])
scores = HPOSet._sim_score(set1, set2, 'omim')
self.assertEqual(scores._data, [])
mock_simscore.assert_not_called()
def test_sim_score(self):
with patch.object(HPOTerm,
'similarity_score',
side_effect=[1, 0.5, 2, 4, 2, 3, 1,
1]) as mock_simscore:
set1 = HPOSet(self.terms[0:2])
set2 = HPOSet(self.terms[2:6])
scores = HPOSet._sim_score(set1, set2)
calls = [
call(self.terms[2], '', ''),
call(self.terms[3], '', ''),
call(self.terms[4], '', ''),
call(self.terms[5], '', '')
]
mock_simscore.assert_has_calls(calls, any_order=True)
self.assertEqual(mock_simscore.call_count, 8)
self.assertEqual(list(scores.columns),
[[1, 2], [0.5, 3], [2, 1], [4, 1]])
self.assertEqual(list(scores.rows), [[1, 0.5, 2, 4], [2, 3, 1, 1]])